EY659475

Overview
NameEY659475
Unique NameEY659475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA2_ELEIN (Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 5.083e-65
Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDVNAAV +IKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRID KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVHSIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 6.639e-65
Identity = 116/122 (95.08%), Postives = 118/122 (96.72%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP GD AKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE REDLAALEKDY
Sbjct:  306 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDPAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEVREDLAALEKDY 427
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 8.671e-65
Identity = 114/122 (93.44%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG DLAKVQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+
Sbjct:  311 KYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDF 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 8.671e-65
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDVN AVA IK KRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  311 KYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.132e-64
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDVNAAVA IKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRA+CMISN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE EFSEAREDLAALEKDY
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEVEFSEAREDLAALEKDY 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA3_MAIZE (Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.295e-64
Identity = 117/122 (95.90%), Postives = 118/122 (96.72%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQ PTVVPG DLAKVQRAVCMISNSTSV EVFSRI+ KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGADLAKVQRAVCMISNSTSVVEVFSRINSKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA1_PELFA (Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.295e-64
Identity = 112/122 (91.80%), Postives = 118/122 (96.72%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPT VPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL ALEKDY
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTAVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLVALEKDY 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.303e-64
Identity = 114/122 (93.44%), Postives = 119/122 (97.54%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCLMYRGDVVPKDV AAVA IKTKRTIQFVDWCPTGFKCGINYQ P+VVPGGDLAKVQRA+CMISN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  311 KYMACCLMYRGDVVPKDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.252e-63
Identity = 113/122 (92.62%), Postives = 119/122 (97.54%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMAC +MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  311 KYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
[Close]
BLAST of EY659475 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.252e-63
Identity = 111/122 (90.98%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:    3 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 368
            KYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
BLAST of EY659475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA2_ELEIN5.083e-6595.08Tubulin alpha-2 chain OS=Eleusine indica GN=TUBA2 ... [more]
TBA1_STYLE6.639e-6595.08Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_CHLRE8.671e-6593.44Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA1_ARATH8.671e-6594.26Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBAE_PHYPO1.132e-6494.26Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA3_MAIZE3.295e-6495.90Tubulin alpha-3 chain OS=Zea mays GN=TUBA3 PE=2 SV... [more]
TBA1_PELFA3.295e-6491.80Tubulin alpha-1 chain OS=Pelvetia fastigiata GN=TU... [more]
TBAN_PHYPO4.303e-6493.44Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA_TETTH1.252e-6392.62Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA1_PARLI1.252e-6390.98Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659475 ID=EY659475; Name=EY659475; organism=Citrus sinensis; type=EST; length=644bp
GCAAGTATATGGCCTGCTGTTTGATGTATCGCGGTGATGTTGTGCCTAAG
GATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCGCACAATTCAGTT
TGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCAACTATCAGCCAC
CAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAGAGGGCTGTCTGC
ATGATTTCCAACTCCACCAGCGTTGCTGAAGTGTTTTCTCGCATTGATCA
CAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGCACTGGTATGTTG
GTGAGGGAATGGAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTGCT
GCCCTGGAGAAGGATTATGAAGAGGTTGGTGCAGAATCTGCTGAGGGGGA
GGATGGCGACGAAGGAGATGAATATTAATTGTGTTTGTGCACTGATAAGG
GATGTGCCATCTTTCCTTTCTTATGTTGTTCTGGATGATGTTGTCCAATA
ATGTTGGGGGTGTTCTAAGTGCCTTTGCACTGACATTNTAATTGATTTCT
TAAGACTTGGTTGATTATGGTATCGGTAACCGTGGCCCATGGCTCTTGCT
TATAAAATTGCTTTTTNGAANAAAAAAAANNAAANAAAAAAAAA
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