EY659471

Overview
NameEY659471
Unique NameEY659471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659471_ssr604 microsatellite EY659471_ssr604:604..619. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13851 contig Csv1_Contig13851:412..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AVAV+  ++G KGT+ F+ EG GPT V GS+SGL PG H   +H  G+ +N  +STGP + PA  +           G L N+T  ++G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 150          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.271e-21
Identity = 61/150 (40.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AVAV++ + G  GT+ F+ +G  PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F +  K IPL+G  S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.965e-21
Identity = 63/150 (42.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AVAV+ GT+  KGT+ FS EG GPTTV GS+SGL PG H   +H  G+ +N  +STGP F P G +           G L N+T   +G+    I  + IPL+G +S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLAGTDV-KGTIFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGL 149          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.873e-21
Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AVAV++ +    GT+ FS +G  PTTV G++SGL PG H   +H  G+ +N  +STGP + PAG +           G L NITV  +G A+F I  + IPL+G  S+IGRG+VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVACGIIGL 150          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 59/150 (39.33%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AVAV++ + G  GT+ F+    GPTTV G +SGL PG H   +H  G+ +N  +STGP F PAG +           G L N+ V  +G  +F I  + IPL+G NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGL 150          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.606e-21
Identity = 61/150 (40.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AV V+  +   KGT+ F  EG GPTTV GS+SGL PG H   IH  G+ +N  +STGP + PAG +           G L N+T   +G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.606e-21
Identity = 61/150 (40.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AV V+  +   KGT+ F  EG GPTTV GS+SGL PG H   IH  G+ +N  +STGP + PAG +           G L N+T   +G+A   +  + IPL+G NS+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 64/151 (42.38%), Postives = 80/151 (52.98%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            MV AVAV++ + G  GT+ FS E  G PTTV G LSGL PG H   +H  G+ +N  +STGP + P G D           G L N+TV  +G A F I  K IPL G  S+IGR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MVKAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 151          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.127e-20
Identity = 57/129 (44.19%), Postives = 74/129 (57.36%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIY-KTIPLSGTNSVIGRGLVVHSSPSPDPGDG 403
            MV AV V++G+ G  G + F+ E  GPTTV G LSGL PG H   +H  G+ +N  +STGP + PA  +           G L N+TV  +G A F I  K IPL G+ S+IGR +VVH+ P  D G G
Sbjct:    1 MVKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPD-DLGKG 128          
BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.472e-20
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 2
Query:   53 MVNAVAVITGTNGRKGTVSFSVEGSGPTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYKT-IPLSGTNSVIGRGLVVHSSP-------------SPDPGDGVAWGTIGL 427
            M   VAV+  + G KGT+ F+ EG+G TTV G++SGL PG H   +H  G+ +N  +STGP F P G             G L NI V  +G ATF I  + IPLSG NS++GR +VVH+ P             + + G  VA G IGL
Sbjct:    1 MAKGVAVLNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVACGIIGL 150          
The following BLAST results are available for this feature:
BLAST of EY659471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC5_MAIZE1.739e-2140.00Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC_NICPL2.271e-2140.67Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]
SODC2_MAIZE2.965e-2142.00Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_CAPAN3.873e-2141.33Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC_CARPA5.058e-2139.33Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC1_ORYSJ6.606e-2140.67Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI6.606e-2140.67Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_SOLCS8.628e-2142.38Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_PANGI1.127e-2044.19Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_BRAOC1.472e-2041.33Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659471 ID=EY659471; Name=EY659471; organism=Citrus sinensis; type=EST; length=686bp
AGTCCATCTTTATTTTCCTCTCTCTAAGGGCGTTGTGATATCACACAGCA
CAATGGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGTCGCAAGGGA
ACTGTTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGTGAAAGGAAG
CCTCTCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTCACACTTACG
GAAACATAAGCAATGATTGGATATCAACTGGACCCCCTTTTAAACCTGCT
GGAGCTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGAGGGTATTGC
TACTTTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAAATTCCGTTA
TTGGAAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGATCCTGGTGAT
GGAGTAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGGCTTCTCTCC
ATACCATAATAAATACATTTGACATGATGTCGAATGTGTCTTGAATACTT
AATAAAATAAATAATATGTTGTACGAATCAAAATCTGGCTATAATAAAAT
AAATAAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGTAGAATGTGG
CCGTAAATAAATAAATAAAAGTCCAGGCGTGCTGTGCACTGTCCTTAAGA
CTATTTCTACTCCNTAAAAAAAAAAAAAAAAAAGGC
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