EY659471

Overview
NameEY659471
Unique NameEY659471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659471_ssr604 microsatellite EY659471_ssr604:604..619. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13851 contig Csv1_Contig13851:412..1098. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY659471 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 2 
Query:   95 KGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYK-TIPLSGTNSVIGRGLVVHSSPSPDPGDG 403
            KGTV F  E    P  V G ++GL  G H   +H +G+ +N  +S+GP F P G +           G L NIT T +G    +I    I L G NS+IGR +VVH+ P  D G G
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPD-DLGKG 120
The following BLAST results are available for this feature:
BLAST of EY659471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC_DROBS8.094e-1138.79Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659471 ID=EY659471; Name=EY659471; organism=Citrus sinensis; type=EST; length=686bp
AGTCCATCTTTATTTTCCTCTCTCTAAGGGCGTTGTGATATCACACAGCA
CAATGGTGAATGCAGTTGCAGTTATTACTGGAACTAACGGTCGCAAGGGA
ACTGTTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACTGTGAAAGGAAG
CCTCTCTGGTTTGCCGCCTGGTGATCACGCACTCATTATTCACACTTACG
GAAACATAAGCAATGATTGGATATCAACTGGACCCCCTTTTAAACCTGCT
GGAGCTGACGGTTTTTTAGAAAACATCACTGTTACTAGTGAGGGTATTGC
TACTTTTGAAATTTACAAGACGATTCCTCTTTCTGGAACAAATTCCGTTA
TTGGAAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAGATCCTGGTGAT
GGAGTAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGGGGCTTCTCTCC
ATACCATAATAAATACATTTGACATGATGTCGAATGTGTCTTGAATACTT
AATAAAATAAATAATATGTTGTACGAATCAAAATCTGGCTATAATAAAAT
AAATAAAAGCCAGGGCATGTCTGTAATATGTTGTACCTTGTAGAATGTGG
CCGTAAATAAATAAATAAAAGTCCAGGCGTGCTGTGCACTGTCCTTAAGA
CTATTTCTACTCCNTAAAAAAAAAAAAAAAAAAGGC
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