EY659470

Overview
NameEY659470
Unique NameEY659470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SALG2 (L-threonine 3-dehydrogenase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tdh PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.650e-16
Identity = 50/162 (30.86%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT 510
            G     +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T
Sbjct:  119 GCFAEYLVIPALNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLNDVMAEL-----GMTEGFDVGLEMSGAPPAFCTMLDTMNHGGRIAMLGIPPSDMSIDWT 274          

HSP 2 Score: 22.7126 bits (47), Expect = 1.650e-16
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  563 TWPLCLEFLXSGKIDVKPLITHR 631
            TW      + SG +D+ P+ITHR
Sbjct:  294 TWYKMAALIQSG-LDLSPIITHR 315          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_VIBCM (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tdh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G     +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL+D+ +E+      M  G DV  + +G     S  L     GG++ L+G+    M +
Sbjct:  121 GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLARKMGVTRAVNVAEQNLEDVMKEL-----GMTEGFDVGLEMSGVPSAFSAMLKTMNHGGRIALLGIPPSSMAI 273          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_VIBCH (L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=tdh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G     +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL+D+ +E+      M  G DV  + +G     S  L     GG++ L+G+    M +
Sbjct:  121 GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLARKMGVTRAVNVAEQNLEDVMKEL-----GMTEGFDVGLEMSGVPSAFSAMLKTMNHGGRIALLGIPPSSMAI 273          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_VIBC3 (L-threonine 3-dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=tdh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G     +V PA   FK+PD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  NL+D+ +E+      M  G DV  + +G     S  L     GG++ L+G+    M +
Sbjct:  121 GCFSEYLVIPAFNAFKIPDGISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLDLARKMGVTRAVNVAEQNLEDVMKEL-----GMTEGFDVGLEMSGVPSAFSAMLKTMNHGGRIALLGIPPSSMAI 273          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 53/160 (33.12%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVSTNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            GS    +V PA   FKLPDN+  E  A+ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V VS       E++  +  A+G   G DV  + +G        +     GGK+ ++G+    M +
Sbjct:  119 GSFAEYLVIPAFNAFKLPDNIPDELAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELARKMGATRAVNVS------KEKLADVMSALGMTEGFDVGLEMSGVPSAFQDMIDKMNHGGKIAMLGIPPSTMAI 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SALAR (L-threonine 3-dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tdh PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.144e-16
Identity = 50/162 (30.86%), Postives = 86/162 (53.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT 510
            G     +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G    V V+  +L D+  E+      M  G DV  + +G      T L     GG++ ++G+   +M++  T
Sbjct:  119 GCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKESLTDVMAEL-----GMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPADMSIDWT 274          

HSP 2 Score: 22.7126 bits (47), Expect = 2.144e-16
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  563 TWPLCLEFLXSGKIDVKPLITHR 631
            TW      + SG +D+ P+ITHR
Sbjct:  294 TWYKMAALIQSG-LDLSPIITHR 315          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SHELP (L-threonine 3-dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tdh PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.569e-16
Identity = 50/159 (31.45%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G+    +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +AK++GA   V V+   L+D+ +++      M  G DV  + +G      + L     GGK+ ++G+   +M +
Sbjct:  119 GAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAKKMGATRAVNVAKEKLEDVMQDL-----GMTEGFDVGLEMSGVPAAFHSMLDTMNHGGKIAMLGIPGGDMAI 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SHEFN (L-threonine 3-dehydrogenase OS=Shewanella frigidimarina (strain NCIMB 400) GN=tdh PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.569e-16
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVST-NLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G+    +V PA   FK+P ++  +  A+ +P    +H     ++  E +VLI GAGPIG++     +  GA  +VI DV++YRL +A+++GA   V V+T NL+D+ +E+      M  G DV  + +G        L     GGK+ ++G+   EM +
Sbjct:  119 GAFAEYLVLPAFNAFKIPADIPDDLAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMGATRAVNVATENLKDVMKEL-----GMTEGFDVGLEMSGVPSAFHAMLDTMNHGGKIAMLGIPGGEMAI 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_EDWI9 (L-threonine 3-dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=tdh PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.569e-16
Identity = 51/160 (31.87%), Postives = 83/160 (51.88%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVSTNLQDIAEEVEKIQKAMG--TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G+    +V PA   FK+PDN+     A+ +P    +H     ++  E +VL+ GAGPIG++     R  GA  +VI DV+DYRL +A+++G    V VS       E + ++ +A+G   G DV  + +G      T L     GGK+ ++G+   +M +
Sbjct:  119 GAFAEYLVIPAFNAFKIPDNIPDALAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCRHVGARHVVITDVNDYRLDLARKMGVTRAVNVS------RESLPEVMQALGMSEGFDVGLEMSGAPPAFHTMLDTMNHGGKIAMLGIPPGDMAI 271          
BLAST of EY659470 vs. ExPASy Swiss-Prot
Match: TDH_SHEWM (L-threonine 3-dehydrogenase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.661e-16
Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   28 GSLPNQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELGADNIVKVS-TNLQDIAEEVEKIQKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV 501
            G+    +V PA   FK+PD++S +  ++ +P    +H     ++  E +VLI GAGPIG++     R  GA  +VI DV++YRL +A+++GA   V V+  +L+D+  E+      M  G DV  + +G      + L     GGKV ++G+   +M +
Sbjct:  119 GAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAQKMGATRAVNVAKEDLKDVMSEL-----GMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKVAMLGIPGGDMAI 271          
The following BLAST results are available for this feature:
BLAST of EY659470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 209
Match NameE-valueIdentityDescription
TDH_SALG21.650e-1630.86L-threonine 3-dehydrogenase OS=Salmonella gallinar... [more]
TDH_VIBCM2.092e-1632.08L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_VIBCH2.092e-1632.08L-threonine 3-dehydrogenase OS=Vibrio cholerae GN=... [more]
TDH_VIBC32.092e-1632.08L-threonine 3-dehydrogenase OS=Vibrio cholerae ser... [more]
TDH_AERS42.092e-1633.13L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_SALAR2.144e-1630.86L-threonine 3-dehydrogenase OS=Salmonella arizonae... [more]
TDH_SHELP3.569e-1631.45L-threonine 3-dehydrogenase OS=Shewanella loihica ... [more]
TDH_SHEFN3.569e-1632.08L-threonine 3-dehydrogenase OS=Shewanella frigidim... [more]
TDH_EDWI93.569e-1631.88L-threonine 3-dehydrogenase OS=Edwardsiella ictalu... [more]
TDH_SHEWM4.661e-1632.08L-threonine 3-dehydrogenase OS=Shewanella woodyi (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659470 ID=EY659470; Name=EY659470; organism=Citrus sinensis; type=EST; length=917bp
AAATTTTTTTTTTCTCCGCCCGTTCATGGTTCCCTGCCTAATCAGGTGGT
GCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGG
AAGGGGCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGT
GCCAATATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGCCCAT
AGGACTTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGCTCCTAGAATTG
TCATTGTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAACTTGGT
GCAGATAATATTGTTAAAGTTTCAACAAATTTGCAGGACATAGCTGAAGA
AGTGGAAAAGATACAGAAAGCCATGGGGACAGGAATAGATGTGAGCTTTG
ATTGTGCAGGCTTTAACAAAACCATGTCAACAGCACTGAGTGCTACTCGT
GCAGGTGGTAAAGTTTGCCTCGTGGGGATGGGTCATCATGAAATGACTGT
CCCACTCACTCCGGCTGCTGCAAGGGATGTGGATGTGGTGGGGGGTGTTT
CGCTACATGAACACCTGGCCACTGTGTCTGGAGTTCCTTANAAGCGGAAA
GATTGATGTAAAGCCCCTTATCACGCATAGGGTTTGGTTTCTNCCAGAAA
GAAGTGGAAGAAGGCCTTGAAACAGTGCTCGTGGTGGTACTGGCATCAAA
GTCATGTTTAATCTGTAAATACAACGTAAGTAAACGTTTGGGCAAAGATG
AAATAAAATGAATTGCCGCCGAGTATATGAATAAAAGGGTAGCTATACTT
ATTTCTATCTATTACAAAATAAATCAGATTTCTCAAAAAAAAAAAAAAGG
CCGGCCGCTTATAAGATACAGCTTATACCCTGGCTGCAACGTTTAACTTT
TTATATGGCACCTAATT
back to top