EY659468

Overview
NameEY659468
Unique NameEY659468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659468 vs. ExPASy Swiss-Prot
Match: CHAC_SCHPO (Cation transport regulator-like protein OS=Schizosaccharomyces pombe GN=SPBC31F10.03 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16
Identity = 65/195 (33.33%), Postives = 90/195 (46.15%), Query Frame = 1
Query:  142 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQE-------------TICWGVAYCVRGGPEKERLAM-EYLERRECEYDSKTLVDXYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIG--HXDDYIIELANEVRKEL 678
            WVFGYGSL+W+P   YD  I  FIK Y R F +   DHRGT   P    TL   +E               CWG+A+ +   P K    + EYL+ RE    +   V  Y       P L   +V+  T     +  +     L +MA+ I+T  G  G+N  YLF+L K +  +     D ++ EL  EVRK++
Sbjct:   11 WVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLTLIPYEEWKQFSDWSFTPFDEGCWGMAFRI---PAKYATQVREYLDDREVNGYTAHSVPVYAHTGDEIPVLENCLVYVGTS---KSPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCLRHLSPESKDIHVFELEAEVRKQM 199          
BLAST of EY659468 vs. ExPASy Swiss-Prot
Match: CHAC_ECOLI (Cation transport protein chaC OS=Escherichia coli (strain K12) GN=chaC PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 58/179 (32.40%), Postives = 81/179 (45.25%), Query Frame = 1
Query:  142 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDXYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHXDDYIIELANEVRKEL 678
            W+FGYGSL+WNP  E+ E   G +  + R F L     RGT   P R   L++   T   GVAY +   PE E L  E     + E  +   +  + + +         IVF   P    +  Y      + +A  IA A GP G N  YLF LE+ +  +G  DD + +L   V+K L
Sbjct:   48 WIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGGRTT--GVAYRL---PE-ETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDP---RHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLL 217          
BLAST of EY659468 vs. ExPASy Swiss-Prot
Match: CHAC_YEAST (Cation transport regulator-like protein OS=Saccharomyces cerevisiae GN=YER163C PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.076e-12
Identity = 55/198 (27.78%), Postives = 84/198 (42.42%), Query Frame = 1
Query:  142 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTL-------------------------EKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDXYREGEPSQPALTG---------------VIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 615
            WV GYGSL++ P   Y  +I   I  + R F  +  DHRGTP +P R  TL                         +   + +  GV Y +   PE  +   EYL  RE    +   V+ + E      A  G               V++ +     + N+ ++GP  ++E A+ IA + GP G+N +YL KLE+A+
Sbjct:    9 WVLGYGSLIYKPPSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIRQTAFLKNVNLYSESAPIQDPDDLVTIGVVYYI--PPEHAQEVREYLNVREQNGYTLHEVEVHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETVDETAKVIAVSHGPSGSNYEYLAKLEQAL 204          
The following BLAST results are available for this feature:
BLAST of EY659468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC_SCHPO1.604e-1633.33Cation transport regulator-like protein OS=Schizos... [more]
CHAC_ECOLI2.560e-1432.40Cation transport protein chaC OS=Escherichia coli ... [more]
CHAC_YEAST1.076e-1227.78Cation transport regulator-like protein OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659468 ID=EY659468; Name=EY659468; organism=Citrus sinensis; type=EST; length=921bp
ANATATATAGTAGAGAGGAAGCGAAGAGAAATACCAAGAGAGAATACAGA
ATCCTAACCTTAGACGTTTTAGCTTGTTTCGTTTCCCTCTTTTGCTTCAA
GTTTCTTCCTTTCTCTCGCGATTTCCTTGAAAATGGTGTTCTGGGTTTTT
GGGTATGGATCATTGGTGTGGAACCCAGGGTTTGAATATGATGAGAAAAT
TTTAGGCTTCATCAAGGACTACAGGCGCGTGTTTGATCTTGCATGCATTG
ATCACAGGGGTACACCTCAACACCCGGCTAGAACTTGCACGCTGGAAAAA
TCTCAAGAAACCATTTGTTGGGGTGTTGCTTATTGTGTCCGAGGAGGTCC
TGAAAAGGAAAGACTCGCTATGGAGTATTTGGAACGAAGAGAATGCGAGT
ACGACTCTAAGACCCTTGTAGACTNTTACAGGGAAGGGGAGCCTTCACAG
CCGGCTCTAACTGGGGTTATAGTTTTCACGTCTACTCCAGACAAAGTATC
AAACAAGTATTATCTGGGGCCTGCTCCATTGGAGGAAATGGCTAGGCAAA
TTGCAACGGCTGTCGGACCCTGTGGAAACAATAGAGACTACCTTTTCAAG
TTGGAGAAGGCCATGTTTGATATTGGTCATGANGACGACTACATAATAGA
GCTGGCAAATGAAGTGAGGAAAGAGCTTGGAACTGCTGAAAAAGAATTCT
CAAGAGAGGAAGTTGGNTGGGTCATCATCCCGCATGCCGCTCACAAATCT
CATATTCCAACCTTTCACTGGGTCTACGCCCTGAGCGGTGGCCATGGATT
CATANAACACANGGCTGACAGACACCATAGCCTAGGGGACTAATCAAGAT
ATCAGCACGTAGCTAACACAATCGCTCATCTTNNGTTCTTCTTTTTTTTT
CACCTTTTCCTACTTTTAGAT
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