EY659440

Overview
NameEY659440
Unique NameEY659440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_STACT (Trigger factor OS=Staphylococcus carnosus (strain TM300) GN=tig PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.459e-18
Identity = 61/238 (25.63%), Postives = 122/238 (51.26%), Query Frame = 3
Query:   87 FDTEDGDKV-LPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYG--AQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVEN-------SIAELKQQKPEYD---EGSRREQVIDIL 761
            +D E G  + +PGF + + G++ G+ K  ++ FPE +  E L G +A F V+  E+ Y+++P+LDD +A +L      +E+ KE L ++  E ++   +       +++     E+DIP+++   +  ++    AQ +Q Q+G+ L      +      ++E +++  E     +K NL +  I   E ++ + ED+ KE+E        S+ ++K+     D   +  R ++VID+L
Sbjct:  187 YDLEIGSGMFIPGFEEQLVGLKTGDEKDVKVTFPEEYHAEELAGKEATFKVKINEIKYKNVPELDDEIANELDSDADNVEEYKENLRKRLSEEKKVNAENVEKEEAINKAVNNAEVDIPEAMINNELDRMMQEFAQRIQ-QSGLNLETYFQISGQDESQLREQMKDDAE---ERVKTNLTLNAIANAEEVEATEEDIDKELEAMSTQFNISVEDIKKTLGSTDIVKDDVRVKKVIDLL 420          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_SYNSC (Trigger factor OS=Synechococcus sp. (strain CC9605) GN=tig PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.105e-17
Identity = 65/250 (26.00%), Postives = 128/250 (51.20%), Query Frame = 3
Query:   90 DTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQA----TDN---AILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQ---KPEYDEGSRREQVIDILEGS*SLEWVRDMQKIS 809
            D E+G +++PGF++ + G++ GETK+    FP+ + +E  RG +A F +E ++L  R+LP+LDD  A +           +ETL    +++EQ  KD A    T N   A++  L + +E+++P++L +++ R L    L Q  A        + +L +P  V+  ++N        ++++ A+  + + E+++       K V+  I E+K++     + D    R+ V+D L     + W+ +   I+
Sbjct:  203 DLENG-RMIPGFIEGVIGMKVGETKTVDCQFPDDYPKEDARGRKASFEIELKDLKTRELPELDDEFAKQ--------ASEQETLADLRKDLEQRLKDDAERRQTSNRRDALVAALVEQLEVELPEALIQQESRNL----LEQTAAQFAQQGMDVKSLFTPDLVRNLMQNSRPEAEERLRRSFALTALAEAEDIKLDD----KAVDAKIKEVKKELSADAKIDPERLRQAVMDDLIQDRLMGWLEENSTIT 435          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_STAS1 (Trigger factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=tig PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.884e-17
Identity = 61/237 (25.74%), Postives = 113/237 (47.68%), Query Frame = 3
Query:   87 FDTEDGD-KVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFE-EQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVEN-------SIAELKQQKPEYD---EGSRREQVIDIL 761
            +D E G    +PGF + + G++ GE K   + FPE +  E L G +A F  +  E+ Y+D+P+L D +A +L     T+++ KE L ++  E ++T  +       +++      ID+P ++   E  R +        Q G+ L      +      ++E +++  E     +K NL +  I   E+++ S +D+ KE+E        S+ ++KQ     D      R ++VID+L
Sbjct:  187 YDLEIGSGSFIPGFEEQLVGVKTGEEKDVNVTFPEEYHAEELAGKEATFKTKVNEIKYKDVPELTDEIANELDSEANTVDEYKENLRKRLTEQKETDAENNQKEEAINKAANNASIDVPDAMINTELDRMVQEFGQRMQQQGLNLETYFQISGQDESQLREQMKDDAE---ERVKTNLTLTAIADAEDIEVSDDDIDKELEKMSEQFNISVEDIKQTLGNTDIVKNDVRIQKVIDLL 420          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_PROM1 (Trigger factor OS=Prochlorococcus marinus (strain NATL1A) GN=tig PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.461e-17
Identity = 57/259 (22.01%), Postives = 124/259 (47.88%), Query Frame = 3
Query:   57 IPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQ--QLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKPEYDEGSR-REQVIDILEGS*SLEWVRDMQKISXXPDE 824
            I          + E G +++PGF++ + G+   + K  +  FP+ + QE  +G +A+F V   +L  ++LP+L+D  A K       +  ++  L ++ +E     + +   +++LD L K +E+DIP+SL +++ R      ++  Q      +Q   + ++ +P+ VK  +E+        ++Q  A+  + K E ++ S +++  ++E   A++K    +  +  R +E + D L       W+ +   +   P E
Sbjct:  192 IEGGSADSIEIELEQG-RMIPGFIEGVIGMNINDEKILKCEFPKDYHQEEAKGRKAEFNVSLEDLKIKELPELNDEFA-KQASDKENMSDLRADLEKRLKEDNDRKQAKTRQDSLLDVLVKELEVDIPKSLIDQEVR------IIVEQTAQNFAQQGIDVKSMFTPELVKSLMESSKGEAEKKLRQKFALKALAKSEKIEVSDKEINSKLEQVEADIKLSNEKNIDAKRLKEAITDDLLQEKLFAWLEENNTVVEKPPE 442          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_SYNS9 (Trigger factor OS=Synechococcus sp. (strain CC9902) GN=tig PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.214e-17
Identity = 55/234 (23.50%), Postives = 124/234 (52.99%), Query Frame = 3
Query:   99 DGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQM-QAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQF---STEDLVKEVENSIAELKQQKPEYDEGSRREQVIDILEGS*SLEWV 788
            D  +++PGF++ + G++ GE+KS    FP+ + +E  RG +A F +E ++L  R+LP+LDD+ A K      T+  +++ L Q+ ++  +  +    ++ ++  L + +E+D+P++L +++ R L      Q  Q GM      + +L +P  ++  ++N        ++++ A+  + + E+++    + +  +KEV+  ++   +  PE      R+ V+D L     + W+
Sbjct:  205 DNGRMIPGFIEGVIGMKVGESKSVDCQFPDDYPKEDARGRKAAFAIELKDLKTRELPELDDAFA-KQASEQDTMADLRKDLEQRLKDDAERRQTSNRNDGLVKALVEQLEVDLPEALIQQESRNLVEQTAAQFAQQGM-----DVKSLFTPDLIRNLMQNSRPEAEERLRRSFALTALAEAEDIKLDDSAIDTKLKEVKKDLSADAKVDPE----RLRQAVMDDLMQEQLMSWL 428          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_STAES (Trigger factor OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tig PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.198e-17
Identity = 66/245 (26.94%), Postives = 122/245 (49.80%), Query Frame = 3
Query:   87 FDTEDGD-KVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL-----QKCREVEQTAKDQ----ATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVEN-------SIAELKQQKPEYD---EGSRREQVIDIL 761
            +D E G    +PGF + I G++ G+ K   + FPE +  E L G +A F  +  E+ ++D+P+L+D +A +L      +++ KE L      QK  E E T K++    AT+NA +D    M+  ++ + + +E G+++        Q G+ L      +  + + +++ +++  E     +K NL +  I   EN++ S ED+ KE+E        S+ ++K      D      R ++VID+L
Sbjct:  187 YDLEIGSGSFIPGFEEQIEGMKTGDEKDVVVTFPEEYHAEELAGKEATFKTKVNEIKFKDVPELNDEIANELDSDAENVDEYKENLRKRLSEQKATEAENTEKEEAINKATENASIDIPEAMINTELDR-MIQEFGQRI-------QQQGLDLQTYYQISGQNEEQLRDQMKDDAE---QRVKTNLTLTAIADEENIEVSDEDIDKELEKMSEQFNISVEDIKSTLGNTDIVKNDVRIQKVIDLL 420          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_STAEQ (Trigger factor OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tig PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.198e-17
Identity = 66/245 (26.94%), Postives = 122/245 (49.80%), Query Frame = 3
Query:   87 FDTEDGD-KVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLL-----QKCREVEQTAKDQ----ATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVEN-------SIAELKQQKPEYD---EGSRREQVIDIL 761
            +D E G    +PGF + I G++ G+ K   + FPE +  E L G +A F  +  E+ ++D+P+L+D +A +L      +++ KE L      QK  E E T K++    AT+NA +D    M+  ++ + + +E G+++        Q G+ L      +  + + +++ +++  E     +K NL +  I   EN++ S ED+ KE+E        S+ ++K      D      R ++VID+L
Sbjct:  187 YDLEIGSGSFIPGFEEQIEGMKTGDEKDVVVTFPEEYHAEELAGKEATFKTKVNEIKFKDVPELNDEIANELDSDAENVDEYKENLRKRLSEQKATEAENTEKEEAINKATENASIDIPEAMINTELDR-MIQEFGQRI-------QQQGLDLQTYYQISGQNEEQLRDQMKDDAE---QRVKTNLTLTAIADEENIEVSDEDIDKELEKMSEQFNISVEDIKSTLGNTDIVKNDVRIQKVIDLL 420          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_GEOSW (Trigger factor OS=Geobacillus sp. (strain WCH70) GN=tig PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.483e-17
Identity = 63/229 (27.51%), Postives = 113/229 (49.34%), Query Frame = 3
Query:    6 VDISATTIDADESNVQNIPDAETKGFHFDTEDGDKV-LPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGA--QLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVE 683
            V+   T +   E  V   P    K  ++  E G    +PGF D + G+Q GE K   + FPE +  + L G  A F V+  E+  + LP LDD  A  +     T+EQ+K+ + ++  E+++   + A  +A++++  +  EIDIP+ + + +  ++     Q LQMQ G+ L      +     A++E ++   E    V    L +  I K EN++ + E++ +E+E
Sbjct:  160 VENGDTAVIDFEGFVDGEPFEGGKAENYSLEIGSGTFIPGFEDQLIGMQAGEEKEIEVTFPEEYHAKELAGKPATFKVKVHEIKEKRLPALDDEFAKDVDDEVETLEQLKDKIRKRLEEMKKNEAEAALRDAVVEKAAENAEIDIPEVMVKNETDRMLREFDQRLQMQ-GLNLELYYQFSGQDEAALREQMKEDAEKRVRVA---LTIEAIAKAENIEVTEEEINEELE 384          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_PROMT (Trigger factor OS=Prochlorococcus marinus (strain NATL2A) GN=tig PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 61/275 (22.18%), Postives = 134/275 (48.73%), Query Frame = 3
Query:   57 IPDAETKGFHFDTEDGDKVLPGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKPEYDEGSRREQVI--DILEGS*SLEWVRDMQKISXXPDENIPHI*KGARSCRSRIK 875
            I          + E G +++PGF++ + G+   + K+ +  FP+ + QE  +G +A+F V   +L  ++LP+L+D  A K       +  ++  L ++ +E     + +   +++LD L K +E+D+P+SL +++ R +   Q  Q  A   ++   + ++ +P+ VK  +E+        ++Q  A+  + K E ++ S +++  ++E   A++K    +  +  R ++ I  D+L+           +K+    +EN   + K     R +IK
Sbjct:  192 IEGGSADSIEIELEQG-RMIPGFIEGVIGMNINDEKTLKCEFPKDYHQEEAKGRKAEFNVSLEDLKIKELPELNDEFA-KQASDKENMSDLRADLEKRLKEDNDRKQAKTRQDSLLDVLVKELEVDLPKSLIDQEVRTIV-EQTAQNFAQQGID---VKSMFTPELVKSLMESSKGEAEKKLRQKFALQALAKSEKIEVSDKEINSKLEQVEADIKLSNEKNIDAERLKEAITDDLLQ-----------EKLFAWLEENNTVVEKTPEKARDQIK 449          
BLAST of EY659440 vs. ExPASy Swiss-Prot
Match: TIG_DEHSB (Trigger factor OS=Dehalococcoides sp. (strain BAV1) GN=tig PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 56/231 (24.24%), Postives = 116/231 (50.22%), Query Frame = 3
Query:  117 PGFLDSISGIQRGETKSFRLAFPESWRQEHLRGVQAQFTVECRELFYRDLPKLDDSLAGKLLPGCTTIEQVKETLLQKCREVEQTAKDQATDNAILDQLYKMVEIDIPQSLFEEQGRQLYGAQLLQMQAGMKLNEQQLAALSSPKAVKEFLENQTENITNVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAELKQQKPE----YDEGSRREQVIDILEGS*SLEWVRDM 797
            PGF   +  +  GE K F + FPE   +  L G  A F V  RE+    LP+L+D+ A +L P   T+ ++++ + +  ++ +        ++ I++ L KM +ID P+ + E +  Q+   QL ++Q+ +K + ++  A+ S    ++  +         +  +LA+G +   ENL  + E++  E+E  I +   +K E    Y++   R ++I +L    ++ ++ ++
Sbjct:  194 PGFGGYLVDMVAGEPKEFSIVFPEDHARAELAGKTAAFKVTVREIKEEKLPELNDAFAHELNPEFNTLSELRQRIRENMQDRQDDKAQAKFEDQIVEALIKMSKIDYPEVMVEAELDQIIEQQLQRLQSNVK-SPEEFRAMLSQMTPEDMQQRYRPLAEQRVASSLALGKLATTENLVPNDEEVDAEIEKLITDAGDKKEEEKALYNQPETRGRLIQLLTARKTMAFIDEI 423          
The following BLAST results are available for this feature:
BLAST of EY659440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
TIG_STACT8.459e-1825.63Trigger factor OS=Staphylococcus carnosus (strain ... [more]
TIG_SYNSC1.105e-1726.00Trigger factor OS=Synechococcus sp. (strain CC9605... [more]
TIG_STAS11.884e-1725.74Trigger factor OS=Staphylococcus saprophyticus sub... [more]
TIG_PROM12.461e-1722.01Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_SYNS93.214e-1723.50Trigger factor OS=Synechococcus sp. (strain CC9902... [more]
TIG_STAES4.198e-1726.94Trigger factor OS=Staphylococcus epidermidis (stra... [more]
TIG_STAEQ4.198e-1726.94Trigger factor OS=Staphylococcus epidermidis (stra... [more]
TIG_GEOSW5.483e-1727.51Trigger factor OS=Geobacillus sp. (strain WCH70) G... [more]
TIG_PROMT7.161e-1722.18Trigger factor OS=Prochlorococcus marinus (strain ... [more]
TIG_DEHSB7.161e-1724.24Trigger factor OS=Dehalococcoides sp. (strain BAV1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-B07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659440 ID=EY659440; Name=EY659440; organism=Citrus sinensis; type=EST; length=920bp
CAATCGTTGATATATCAGCAACAACAATAGATGCAGATGAATCAAATGTT
CAAAATATTCCAGATGCAGAGACCAAAGGATTTCATTTTGATACAGAAGA
TGGGGACAAAGTTCTTCCAGGTTTTCTTGATTCTATAAGTGGAATTCAAC
GAGGTGAAACAAAGTCCTTTCGACTCGCATTCCCTGAATCCTGGAGACAA
GAACATCTTCGTGGTGTTCAAGCTCAATTTACTGTTGAATGCAGAGAACT
GTTTTATAGAGATTTGCCGAAATTGGATGACTCCCTTGCTGGAAAGCTTC
TTCCTGGATGCACTACCATAGAGCAGGTCAAGGAAACATTATTGCAGAAG
TGTCGAGAAGTGGAGCAAACTGCAAAAGACCAGGCGACTGATAATGCAAT
TCTAGACCAGCTTTACAAGATGGTGGAAATTGATATTCCTCAATCCTTGT
TTGAGGAACAAGGAAGGCAGCTTTATGGGGCTCAACTTTTGCAGATGCAG
GCAGGTATGAAATTGAACGAACAGCAGTTGGCTGCTCTATCAAGCCCAAA
AGCAGTAAAAGAGTTTCTGGAAAACCAGACGGAGAACATAACCAATGTGA
TAAAACAGAATCTAGCCGTCGGAGATATCTTTAAACGTGAAAATTTGCAG
TTTTCGACTGAAGACTTAGTCAAAGAAGTTGAAAACTCCATTGCTGAATT
AAAACAACAGAAACCAGAATATGATGAGGGATCGCGTAGAGAACAGGTGA
TAGACATACTCGAAGGGAGCTAAAGTCTCGAATGGGTGAGAGACATGCAG
AAAATCAGTNCANACCCAGATGAGAACATACCCCATATATGAAAAGGAGC
TAGGAGTTGCAGGAGCCGGATTAAAATTGCATTGCAGAGCATTGGTGCTC
TGCAAATTTTGATTGAAAAA
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