EY659430

Overview
NameEY659430
Unique NameEY659430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.788e-66
Identity = 133/223 (59.64%), Postives = 155/223 (69.51%), Query Frame = 1
Query:  112 NLQMEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRE 771
            ++ +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK CP+A +N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA TF A                 HAGVT LPL SQ  P    S +
Sbjct:    4 SMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSD 226          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.867e-65
Identity = 123/199 (61.81%), Postives = 151/199 (75.88%), Query Frame = 1
Query:  175 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRE 771
            A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G  +L + L  V++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISNPVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++                HAG+T LPLLS+ KP V ++ E
Sbjct:   81 ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDE 279          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.530e-64
Identity = 126/189 (66.67%), Postives = 140/189 (74.07%), Query Frame = 1
Query:  184 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKP 750
            KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ L   IAK CP A VN+ISNPVNSTVPIAAE+FKKAGTYD KKL GVT LDVVRA TF A                 HAG+T LPL SQ  P
Sbjct:   31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASP 219          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.998e-64
Identity = 125/189 (66.14%), Postives = 143/189 (75.66%), Query Frame = 1
Query:  184 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKP 750
            KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+SH++T + V+G+ G+ QL  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIVR+L   IAK CP+A +N+ISNPVNSTVPIA+EV KKAG YD KKL GVT LDVVRA TF A                 HAG+T LPL SQ  P
Sbjct:   28 KVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAGIVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKTFYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATP 216          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 7.592e-64
Identity = 129/207 (62.32%), Postives = 144/207 (69.57%), Query Frame = 1
Query:  160 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRETDT 780
            + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ L   IAK CP+A VN+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVR  T  A                 HAGVT LPL SQ  P    S +  T
Sbjct:   23 SSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRVKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQAILSGDALT 229          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.750e-60
Identity = 124/219 (56.62%), Postives = 149/219 (68.04%), Query Frame = 1
Query:  115 LQMEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRE 771
            +Q   NS LR    R    A   KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD+SH+D+ A V    G  +L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIVR L   IAK  P A + +I+NPVNSTVPIA+EV KKAG YDPK++ GVT LDVVR+  FV+E                HAG+T +PLLSQVKP   +S E
Sbjct:    9 VQAAANSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEE 225          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.935e-59
Identity = 115/196 (58.67%), Postives = 143/196 (72.96%), Query Frame = 1
Query:  184 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRE 771
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +ISNPVNST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG T +PL+SQ  P V + ++
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQD 221          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.935e-59
Identity = 114/196 (58.16%), Postives = 143/196 (72.96%), Query Frame = 1
Query:  184 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRE 771
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +I+NPVNST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG T +PL+SQ  P V + ++
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTSACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQD 221          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM_PIG (Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.527e-59
Identity = 114/196 (58.16%), Postives = 143/196 (72.96%), Query Frame = 1
Query:  184 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRE 771
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVNST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG T +PL+SQ  P V + ++
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQD 221          
BLAST of EY659430 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 2.527e-59
Identity = 114/196 (58.16%), Postives = 143/196 (72.96%), Query Frame = 1
Query:  184 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGVDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTNLPLLSQVKPPVAYSRE 771
            KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  QL + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +I+NPVNST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG T +PL+SQ  P V + ++
Sbjct:   26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQD 221          
The following BLAST results are available for this feature:
BLAST of EY659430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
MDHM1_ARATH2.788e-6659.64Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHP_ARATH6.867e-6561.81Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM2_ARATH1.530e-6466.67Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM_FRAAN1.998e-6466.14Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_BRANA7.592e-6462.32Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHM_CAEEL1.750e-6056.62Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDHM_RAT1.935e-5958.67Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_PONAB1.935e-5958.16Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]
MDHM_PIG2.527e-5958.16Malate dehydrogenase, mitochondrial OS=Sus scrofa ... [more]
MDHM_HUMAN2.527e-5958.16Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-009-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659430 ID=EY659430; Name=EY659430; organism=Citrus sinensis; type=EST; length=898bp
ATGTATCATTATTGATCACATTCACACCACCATACTTCAACAAAGAAAAT
GGAGTTTAGCTCAGAGGCTAATCAGCGCATTGCTAGAATCTCTGCTCATC
TTTACCCTCCAAATCTCCAGATGGAGGAGAATTCTTGCTTGAGGCAAGCT
AAATGCCGGGCAAAAGGCGGGGCAGCTGGATTCAAAGTAGCCATCTTGGG
TGCTGCTGGAGGCATTGGTCAACCCCTTGCAATGCTAATGAAGATAAACC
CCCTGGTCTCAGTCCTTCACCTCTATGATGTTGTCAATACCCCTGGTGTC
ACTGCTGATATTAGCCATATGGACACCGGCGCTGTGGTACGGGGTTTCCT
AGGCCAGCCACAGCTTGAGAATGCTCTCACAGGGGTGGACCTTGTCATTA
TCCCTGCCGGCGTTCCGAGGAAGCCTGGAATGACCAGGGATGATCTTTTC
AATATCAATGCTGGAATTGTCAGGACACTCTGTGAAGGCATCGCAAAGTG
TTGCCCCAATGCGACTGTCAATTTGATCAGTAATCCAGTGAACTCTACAG
TTCCTATTGCCGCAGAGGTTTTCAAGAAAGCTGGTACTTATGATCCAAAG
AAACTCTTGGGAGTTACAATGCTCGATGTCGTAAGAGCCAACACATTCGT
GGCGGAAGTTTTGGGACTTGATCCTANGGATGTTGATGTTCCTGTTGTTG
GAGGTCATGCTGGAGTAACAAATTTGCCACTTTTATCACAGGTTAAGCCT
CCTGTAGCTTACTCAAGAGAAACTGATACCTGACGAACGCATACAAATGG
TGGACAAANNTNNGTGAGCAAAGCTGGGGCTGGCTCTGCACACTCTCATG
GCTATGCAGCGGTTAAATTTGCGATCTGCCTCGTGGGCTGAAAGAAAG
back to top