EY659415

Overview
NameEY659415
Unique NameEY659415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:458..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 1.102e-75
Identity = 135/218 (61.93%), Postives = 169/218 (77.52%), Query Frame = 3
Query:   42 VKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            +KKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y++G  G ++    T+FD TEK ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE +    IDT+S+ G
Sbjct:  151 IKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFG 366          

HSP 2 Score: 27.335 bits (59), Expect = 1.102e-75
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  692 GHGRFQTTQEKQKYYGRMK 748
            GHGRFQT  E +++ G +K
Sbjct:  366 GHGRFQTPAEAKQFLGTLK 384          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 1.102e-75
Identity = 135/218 (61.93%), Postives = 169/218 (77.52%), Query Frame = 3
Query:   42 VKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            +KKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV++A   FEK + + + F+++EMID+IGVT+GKG EG   RWG  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N K+Y++G  G ++    T+FD TEK ITPMGGF  YG+V++D++M+ G   GP KRV+TLR+SLL  TSR ALE +    IDT+S+ G
Sbjct:  151 IKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFG 366          

HSP 2 Score: 27.335 bits (59), Expect = 1.102e-75
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  692 GHGRFQTTQEKQKYYGRMK 748
            GHGRFQT  E +++ G +K
Sbjct:  366 GHGRFQTPAEAKQFLGTLK 384          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 2.367e-73
Identity = 131/238 (55.04%), Postives = 176/238 (73.95%), Query Frame = 3
Query:   42 VKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLGMAASRLHRRNRSTM 737
            +KKY  V+RV+ HTQ+ K+   +QKKAH+ME+Q+NGGT+AEKV +A    EKQ+PV +VF ++E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK+Y++G+      G    +   T +D T+K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR ALE I+   IDT+S+ G    +  +  R+ M
Sbjct:  153 MKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEVQLNGGTVAEKVAWAQARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFM 389          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 272.707 bits (696), Expect = 2.004e-72
Identity = 130/238 (54.62%), Postives = 174/238 (73.11%), Query Frame = 3
Query:   42 VKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQ------ESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLGMAASRLHRRNRSTM 737
            +KKY  V+RV+ HTQ+ K+   +QKKAH+MEIQ+NGGT+AEKV +A    EKQ+PV +VF + E+ID+I VTKG+G +GV +RW   +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKK++++G+G          +   T +D T K ITP+GGFPHYG V +D++M+KGC  G KKRV+TLR+SLL   SR A+E I+   IDT+S+ G    +  +  R+ M
Sbjct:  153 MKKYCKVIRVIVHTQM-KLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFM 389          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.864e-69
Identity = 125/218 (57.34%), Postives = 163/218 (74.77%), Query Frame = 3
Query:   42 VKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            +K+ A  VRVL  TQ   +KGL  KKAH+ EIQVNGG+I+EKV++A G  EK+I +  VF  +E ID IGVTKGKG++G V R+GV + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK+VY +G G        TEFD TEK I+PMGGFPHYG V++D++M+KG  VG +KRVVTLR+SLL+Q    A EE+    +DTSS++G
Sbjct:  146 IKERAHCVRVLVQTQPTLIKGLGLKKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTVKRFGVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSSNIK---TEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIG 357          

HSP 2 Score: 35.039 bits (79), Expect = 1.864e-69
Identity = 14/27 (51.85%), Postives = 21/27 (77.78%), Query Frame = 2
Query:  686 QVGHGRFQTTQEKQKYYGRMKA*LYAK 766
            ++GHGRFQT+ EK+ +YG  KA + A+
Sbjct:  355 KIGHGRFQTSAEKKAFYGARKADIAAE 381          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.823e-42
Identity = 78/130 (60.00%), Postives = 102/130 (78.46%), Query Frame = 3
Query:  198 QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMI 569
            ++PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPAR +F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+G F HYG V +D++M+
Sbjct:    1 RVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.952e-41
Identity = 92/229 (40.17%), Postives = 131/229 (57.21%), Query Frame = 3
Query:   12 EEKYPSSAGEVK---KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSR 689
            EE +    GE++   K   VV + A    +      +KK  +ME  V G +I EK +Y      K+I V  + Q+ E++DI+ VTKGKG +G V RWGV     K  +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+ G+ +  G       + +ITP GGFPHYG+VK+D++MI G   G  KR++ +R ++     R   E  +   I   S+
Sbjct:  136 EEVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKGKGTQGPVKRWGVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGENGKLTLNG------EKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMRPAVRPPAKRPPAEAPQITYISRESK 358          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 4.218e-38
Identity = 82/187 (43.85%), Postives = 115/187 (61.50%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            VR L  TQ   +K   +KK  +ME  + G ++ EK +Y      K+I V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++
Sbjct:  161 VRALVSTQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAI 339          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.509e-38
Identity = 86/213 (40.38%), Postives = 128/213 (60.09%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            VRVL HT   K+  L +KK  ++EI++ G  I E+++YA     KQ+ +  VFQ+ E++D IGVTKGKG++G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ K+G  G E              ITP GGF HYG+++++Y+++KG   GP KR++ LR+++  Q   + + EI    I T+S+ G
Sbjct:  139 VRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQG 334          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.195e-38
Identity = 80/187 (42.78%), Postives = 117/187 (62.57%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            VR +  TQ   +K   +KK  +ME  + G ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+     +   + TE +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++
Sbjct:  163 VRAIVATQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK-----LKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAI 342          
The following BLAST results are available for this feature:
BLAST of EY659415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3B_SCHPO1.102e-7561.9360S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO1.102e-7561.9360S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3L_BOVIN2.367e-7355.0460S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3L_HUMAN2.004e-7254.6260S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_ENCCU1.864e-6957.3460S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_PIG2.823e-4260.0060S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]
RL3_THESM6.952e-4140.1750S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_PYRHO4.218e-3843.8550S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]
RL3_METJA5.509e-3840.3850S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_PYRFU7.195e-3842.7850S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659415 ID=EY659415; Name=EY659415; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGTCAAGAAG
TATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAA
GGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAATGGTG
GCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAA
ATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGG
TGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTA
CCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATT
GGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCA
GAATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTG
GCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACT
GAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAA
AGATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGG
TGGTCACTCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTT
GAGGAAATCAAAATNNCAGTCATTGATACCTCTTCCAGGTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCA
GCCAGTCTAAATTTATCCCAGTTGACTATCTNGGAACAGTTTTTGAGCCT
GGCATCAGCTGGGNNTCTTCCAGGNTTCTTTTTCCTTTCCCTTGNNNCTT
TN
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