EY659415

Overview
NameEY659415
Unique NameEY659415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:458..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.195e-38
Identity = 81/187 (43.32%), Postives = 115/187 (61.50%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            VR L  TQ   +K   +KK  +ME  + G ++ EK +Y      K++ V  V ++ E++D+I VTKGKG +G V RWG+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D++MI G   G  KR++ +R ++
Sbjct:  160 VRALVATQPWVIK--LKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGK------LVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAI 338          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.357e-36
Identity = 80/189 (42.33%), Postives = 112/189 (59.26%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            +RVLAHT  R + G+ +K   +MEI V G ++ E++  A G    Q+ V  +F   E ID+  VTKGKG +G V RWG+    RK  R   LR V  +G WHPAR+S+ V + GQ GYH RTE NK++  +G  G               DITP GGF  YG+V+++Y++IKG   GP KR+V +R+++
Sbjct:  137 IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQVAVSNIFNVGEWIDVSAVTKGKGTQGPVKRWGIMLQKRKHSRTGKLRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIGTNG--------------TDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRAI 311          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.357e-36
Identity = 87/232 (37.50%), Postives = 130/232 (56.03%), Query Frame = 3
Query:    6 RPEEKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            + E+K   +   V + A+ VRV+ HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E+    I T S+ G
Sbjct:  119 KEEKKTADALDAVLEKATEVRVIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQG 333          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.314e-36
Identity = 88/233 (37.77%), Postives = 130/233 (55.79%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASV-----VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSR 689
            EE + +  G+++   +      VR+L HTQ   + GLK KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D+LMI+G   G  KR++ +R ++     +  +E  +   +   S+
Sbjct:  121 EEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.948e-36
Identity = 86/233 (36.91%), Postives = 129/233 (55.36%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASV-----VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSR 689
            EE + +  G+++   +      VR+L HTQ   +K   +KK  +ME  + G  +  K +YA     K+I    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+    G       E DITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +   +   S+
Sbjct:  121 EEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.948e-36
Identity = 87/232 (37.50%), Postives = 129/232 (55.60%), Query Frame = 3
Query:    6 RPEEKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            + E+K   +   V + A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L EI    I T S+ G
Sbjct:  119 KEEKKTVDALDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEI--AYISTESKQG 333          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.948e-36
Identity = 86/232 (37.07%), Postives = 129/232 (55.60%), Query Frame = 3
Query:    6 RPEEKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            + E+K   +   V + A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E+    I T S+ G
Sbjct:  119 KEEKKTADALDAVLEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQG 333          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.156e-36
Identity = 86/232 (37.07%), Postives = 129/232 (55.60%), Query Frame = 3
Query:    6 RPEEKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            + E+K   +   V + A+ VR + HT   K  G+ +KK  ++EI++ G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E+    I T S+ G
Sbjct:  119 KEEKKTADALDAVVEKATEVRAIVHTN-PKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQG 333          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.734e-36
Identity = 88/222 (39.64%), Postives = 126/222 (56.76%), Query Frame = 3
Query:    3 TRPEE-KYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 659
            T+ EE K   S   V +    +RV+ HT   K  G+ +KK  ++EI+V G ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E+
Sbjct:  117 TKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV 323          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.734e-36
Identity = 88/222 (39.64%), Postives = 126/222 (56.76%), Query Frame = 3
Query:    3 TRPEE-KYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 659
            T+ EE K   S   V +    +RV+ HT   K  G+ +KK  ++EI+V G ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E+
Sbjct:  117 TKKEEIKTVESLDAVLEKTVDLRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV 323          
The following BLAST results are available for this feature:
BLAST of EY659415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_PYRAB7.195e-3843.3250S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]
RL3_METTP1.357e-3642.3350S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_METM71.357e-3637.5050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_PYRKO2.314e-3637.7750S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_THEGJ3.948e-3636.9150S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_METMP3.948e-3637.5050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM63.948e-3637.0750S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM55.156e-3637.0750S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METVS6.734e-3639.6450S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA6.734e-3639.6450S ribosomal protein L3P OS=Methanococcus vanniel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659415 ID=EY659415; Name=EY659415; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGTCAAGAAG
TATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAA
GGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAATGGTG
GCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAA
ATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGG
TGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTA
CCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATT
GGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCA
GAATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTG
GCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACT
GAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAA
AGATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGG
TGGTCACTCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTT
GAGGAAATCAAAATNNCAGTCATTGATACCTCTTCCAGGTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCA
GCCAGTCTAAATTTATCCCAGTTGACTATCTNGGAACAGTTTTTGAGCCT
GGCATCAGCTGGGNNTCTTCCAGGNTTCTTTTTCCTTTCCCTTGNNNCTT
TN
back to top