EY659415

Overview
NameEY659415
Unique NameEY659415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:458..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.795e-36
Identity = 84/233 (36.05%), Postives = 130/233 (55.79%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASV-----VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSR 689
            EE + +  G+++   +      VR+L HTQ   +K   +KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWG+     K  R    R V  +G WHP RV +TV +AGQ G+HHRTE NK++  +G+ G+     +   ++ E +ITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +   I   S+
Sbjct:  121 EEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.149e-35
Identity = 82/220 (37.27%), Postives = 128/220 (58.18%), Query Frame = 3
Query:   42 VKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            V+  AS VRV+ +TQ   + G+ +K   +ME ++ GG + E +DYA     K+I V  VF +  +ID+I VTKGKG++G V RWGV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ K+G+ G+E              ITP GGF HYG+++  Y+++ G   GP KR++ +R ++  +  +   + +    + T+S+ G
Sbjct:  128 VENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.500e-35
Identity = 78/189 (41.27%), Postives = 116/189 (61.38%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            +RV+  TQ +K  G+ +KK  +ME ++ G  + E+ +YA     ++I    VF + E++D+  +TKGKG++GVV RWGVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK++ K+G+ G+E              +TP GGF +YG+V+ DY+MI G   GPKKR++ +R ++
Sbjct:  145 IRVIVATQPKKA-GVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 8.232e-34
Identity = 77/213 (36.15%), Postives = 122/213 (57.28%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            VR + HT   K   L +KK  ++EI++ G  I++ + YA     K++ ++ VF   E ID + +TKGKG++G V RWG+  +  +  ++G+ R    IG W P R+ +TV  AGQ G+H RTE NK++ K+G+ G E              I P GGF +YG+VK++Y+++KG   GP KR+V LR+++     +  L E+    + T S+ G
Sbjct:  137 VRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPVKRWGIKIQFGKHQNKGVGRHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPEL--TYVSTESKQG 332          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.336e-33
Identity = 86/240 (35.83%), Postives = 126/240 (52.50%), Query Frame = 3
Query:    3 TRPEEKYPSSAGEVK-----KYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLGM 698
            T P + Y   A   K     +Y + VRV+ HT  R +  + +KK  + E  + G T  EK +YA     K +    +F +   +D I VTKGKG++G V RWG+     K  R    R +  +G W P+R  +TV +AGQ GYH RTE NK++ K+G             D +E D + P GGF  YG+V++DY+MIKG   GP KR+V LR+++     +    +I    I T+S+ G+
Sbjct:  114 TPPADDYDQEAAIEKIRSNMEYVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWGIRIQYGKAARSSKGRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIG-------------DASEADLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAIRAAGKQEEAPQIN--YISTASKQGV 337          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.336e-33
Identity = 81/213 (38.03%), Postives = 120/213 (56.34%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASV--------VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            + Y S+A + KKY+          +  LA+TQ   M G+ +K   LMEI+V GG IA++ +YA+G   K+I +  V +     DI  +T GKG +G V RWGVT   RK   G   R V  +G W+P  V + V ++GQ GY  RTE NK++ K+G+ G E              ITP GGF +YG++++ Y++IKG   GP KR++ +R ++
Sbjct:  118 KNYDSTAAK-KKYSDALAAGLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKEIRLSNVIETGAYADITAITIGKGTQGPVKRWGVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI 315          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.969e-33
Identity = 80/233 (34.33%), Postives = 130/233 (55.79%), Query Frame = 3
Query:    6 RPEEKYPSSAGEVKK-YASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            + +E+    A  VKK   + +RV+  T   ++ G+ +K   LME ++ GG +A++ ++A     K + +  VF   E++D+  +TKG G +G V RWG+    RK  R  +K  V  +G W+P R+ + V + GQ GYH RTE NK++ K+G             D+ E +ITP GGF HYG++++DY+M+KG   GP KR+V +R ++  +       EI    + T S++G
Sbjct:  121 KTDEQLAKIAELVKKGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------DKAE-EITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVRPKNMPKQAPEI--TYLSTQSKMG 337          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.101e-33
Identity = 83/203 (40.89%), Postives = 117/203 (57.64%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 614
            EK   +  E +  A  VRVL  TQ R + G+ +K   ++EI V G  +I E++++A     K +    VF   +++D+I VTKGKGY+GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G  G E              ITP  GFPHYG++K  Y++++G   G +KR+V LR
Sbjct:  127 EKQLKALEEYRDVAVDVRVLVATQPR-LSGIGKKTPEVLEIPVGGVPSIDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.101e-33
Identity = 77/205 (37.56%), Postives = 115/205 (56.10%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            E   ++ GE K   S +  LA+T+  ++ G+ +K   LME+++ GG++ +++ YA     K+I +    +  E +D+  VT GKG EG V RWGV    RK  RG +K  +  +G WHP  V + V + GQ GY  RTE NK++ K+G  G E              ITP GGF HYG+V+  Y++IKG   GP KR+V +R ++
Sbjct:  127 EAVKAAVGEGK--VSELYALAYTRPMELTGVPKKVPDLMEMRIAGGSLEDQIAYAAEILGKEITISGNLEVGEYVDVTAVTTGKGTEGPVKRWGVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI 315          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_STAMF (50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.552e-32
Identity = 78/190 (41.05%), Postives = 116/190 (61.05%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFT-VARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            +RV+A T I  + G+ +KK  ++EI++ GGT++E++DYA       + VD VF++ + IDIIGVTKGKG++GV+ R+GV  LPR  K  +G RK   IG+  P   + +   + GQ G+H RTE NK++ K+G  G E              +TP GGF  YGIV   Y+M+ G  +GP+KR++ LR  +
Sbjct:  200 IRVIAST-IPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK---IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIGINGWE--------------VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPI 371          
The following BLAST results are available for this feature:
BLAST of EY659415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_THEON8.795e-3636.0550S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_ARCFU1.149e-3537.2750S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METKA1.500e-3541.2750S ribosomal protein L3P OS=Methanopyrus kandleri... [more]
RL3_META38.232e-3436.1550S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_METTH5.336e-3335.8350S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_METB65.336e-3338.0350S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_UNCMA6.969e-3334.3350S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_PYRCJ9.101e-3340.8950S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]
RL3_METMJ9.101e-3337.5650S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_STAMF1.552e-3241.0550S ribosomal protein L3P OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659415 ID=EY659415; Name=EY659415; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGTCAAGAAG
TATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAA
GGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAATGGTG
GCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAA
ATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGG
TGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTA
CCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATT
GGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCA
GAATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTG
GCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACT
GAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAA
AGATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGG
TGGTCACTCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTT
GAGGAAATCAAAATNNCAGTCATTGATACCTCTTCCAGGTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCA
GCCAGTCTAAATTTATCCCAGTTGACTATCTNGGAACAGTTTTTGAGCCT
GGCATCAGCTGGGNNTCTTCCAGGNTTCTTTTTCCTTTCCCTTGNNNCTT
TN
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