EY659415

Overview
NameEY659415
Unique NameEY659415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:458..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.517e-32
Identity = 81/203 (39.90%), Postives = 115/203 (56.65%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 614
            +K      E +  A  VR L  TQ   + G+ +K   L+EI + G  ++ E++++A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G+ G E              ITP  GFPHYG+VK  Y++I+G   G +KR+V LR
Sbjct:  127 DKQLKKVEEFRDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERINFAISLLGKTVSPKDVFTPGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.899e-32
Identity = 84/215 (39.07%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKD-ITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLGM 698
            +RVL HT+  K+  + +KK  ++E  + G ++ +K++YA     K+I    VFQ+ E  D I  TKGKG +G V R+GV     K  R    R V  IG W P R  +TVA  GQ GYH RTE NKK+ K+G             D +E D I P GGF  YG VK++Y+++KG   GP KR+V LR+ +   + ++   EI    I T+S+ G+
Sbjct:  139 IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKEITPQDVFQEGEYTDAIATTKGKGVQGPVKRFGVRIQYGKAARSGIERHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPEIS--YISTTSKQGV 337          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.928e-31
Identity = 81/203 (39.90%), Postives = 112/203 (55.17%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 614
            +K      E K  A  VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G  G E              ITP  GF HYG+VK  Y++I+G   G +KR+V LR
Sbjct:  131 DKQMKKVEEFKDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLR 317          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.928e-31
Identity = 80/203 (39.41%), Postives = 113/203 (55.67%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 614
            +K      E +  A  VR L  TQ   + G+ +K   L+EI + G   I E++ +A     K +    VF   +++D+I VTKGKG++GVV R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G+ G E              ITP  GFPHYG++K  Y++I+G   G +KR+V LR
Sbjct:  127 DKQMKQVEEYRDVAVEVRALVATQPH-LSGIGKKTPELLEIPIGGVPNIDERIKFAISLLGKTVSPKDVFSPGQLVDVIAVTKGKGWQGVVKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.824e-31
Identity = 76/223 (34.08%), Postives = 124/223 (55.61%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVID 677
            EK  ++ G+V +    V VL +T+  ++ G+ +K   LMEI+V GG+  E+ DYA       + + ++  + +  DI G+TKGKG++G V R+G+T   RK  R    R +  +G W P  V + V   GQ G+  RTE NK++ K+G+   E              I P GGF HYG+V+++Y++IKG   GP KR+V +R +     +R+  ++I+  V++
Sbjct:  125 EKINAAIGDVVE----VMVLMYTKPTELTGVPKKVPDLMEIRVAGGSAQERFDYALSILGTDVDMKSLLSEGQFADITGITKGKGFQGAVKRFGITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVE 324          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.522e-31
Identity = 80/203 (39.41%), Postives = 112/203 (55.17%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 614
            +K      E K  A  VR L  TQ   + G+ +K   L+EI + G  ++ E++ +A     K +    VF   +++D+I VTKGKGY+GV+ R+GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK+V K+G  G E              ITP  GF HYG+++  Y++I+G   G KKR+V LR
Sbjct:  127 DKQMKKVEEFKDVAVDVRALVATQPH-LSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGKTVSPKEVFTAGQLVDVIAVTKGKGYQGVIKRFGVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.519e-31
Identity = 72/213 (33.80%), Postives = 115/213 (53.99%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            +  L +TQ   + G+ +K   LME+ + GGT+ +KV++A      ++ +  V    E  D+  +T GKG +G V RWG+    RK  RG +K  +  +G W+P  V + V + GQ GY  RT+ NK++ K+G+ G               DITP GGF HYG++++ Y+MIKG   GP KR++ +R ++ K      +  I+   + T S+ G
Sbjct:  141 LHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKVEFAQSIIGNEVNLADVIGAGEYADVTAITTGKGTQGPVKRWGIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGENG--------------TDITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIRIRPAVRKGEHHARVPAIE--FVSTQSKQG 337          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.898e-30
Identity = 79/187 (42.25%), Postives = 110/187 (58.82%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPA-RVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLR 614
            +RVL  TQ + +  L +KK  ++E+QV GG I  +++Y      K + V  VF++ ++IDIIGVTKGKG++GVV R+GV  LPR  K  +G RKV   GA  P+      V + GQ GYH RTE NK++ K+     E              I P GGF +YGIV++ YL+I+G  +G KKR + LR
Sbjct:  149 LRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVVKRYGVVELPRWHKHRKGSRKV---GARGPSFSTPSYVPQPGQMGYHRRTEYNKRILKISDDPNE--------------INPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLR 318          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            EEK+ S    +K     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++
Sbjct:  137 EEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV 329          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            EEK+ S    +K     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++
Sbjct:  137 EEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV 329          
The following BLAST results are available for this feature:
BLAST of EY659415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_PYRAE4.517e-3239.9050S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METST5.899e-3239.0750S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_PYRIL2.928e-3139.9050S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_PYRAR2.928e-3139.4150S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_METLZ3.824e-3134.0850S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_THENV6.522e-3139.4150S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_METPE8.519e-3133.8050S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_SULTO1.898e-3042.2550S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_SULIY2.479e-3037.3250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIN2.479e-3037.3250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659415 ID=EY659415; Name=EY659415; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGTCAAGAAG
TATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAA
GGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAATGGTG
GCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAA
ATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGG
TGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTA
CCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATT
GGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCA
GAATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTG
GCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACT
GAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAA
AGATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGG
TGGTCACTCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTT
GAGGAAATCAAAATNNCAGTCATTGATACCTCTTCCAGGTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCA
GCCAGTCTAAATTTATCCCAGTTGACTATCTNGGAACAGTTTTTGAGCCT
GGCATCAGCTGGGNNTCTTCCAGGNTTCTTTTTCCTTTCCCTTGNNNCTT
TN
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