EY659415

Overview
NameEY659415
Unique NameEY659415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:458..1362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            EEK+ S    +K     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++
Sbjct:  137 EEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV 329          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            EEK+ S    +K     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++
Sbjct:  137 EEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV 329          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            EEK+ S    +K     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++
Sbjct:  137 EEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV 329          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 78/209 (37.32%), Postives = 119/209 (56.94%), Query Frame = 3
Query:   12 EEKYPSSAGEVKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            EEK+ S    +K     +   R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++
Sbjct:  137 EEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------DPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV 329          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 76/214 (35.51%), Postives = 111/214 (51.87%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLGM 698
            ++VL HT   K+  + +KK  + E  + G    EK++ A      ++    +  + + +D I  TKGKG++GVV RWG+     K  R    R V  IG W P+R  +TVA+AGQ GYH RTE NKK+ K+    +               I P GGF  YG+VK+DY+++KG   GP KR+V LRQ +        + +I    I T S+ G+
Sbjct:  138 IKVLVHTN-PKVTSVPKKKPDIFECGIGGANPEEKLNTALELLGNEVKASDILNEGQFVDAIATTKGKGFQGVVKRWGIRIQYGKAVRAGKGRHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPIRPNNKSEDMPQIN--YISTKSKQGV 336          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.479e-30
Identity = 76/205 (37.07%), Postives = 110/205 (53.66%), Query Frame = 3
Query:   15 EKYPSSAGEVKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            EK    A E  K   VV  L +T+   + G+ +K   LME +++GG++ E+ +Y      K   + ++F+  +  D+  +TKGKG +G V RWGV    RK  RG   R V  +G W P  V + V   GQ GYH RTE NK++ K+G+ G E              ITP GGF +YG V+  Y++IKG   GP KR+V +R ++
Sbjct:  126 EKKIREALEADKIVDVV-ALTYTRPSVLTGVPKKVPDLMETRIDGGSMTERFEYGLSMLGKDFDIRSLFKVGQYTDVTAITKGKGTQGPVKRWGVHLRKRKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM 315          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.211e-30
Identity = 74/213 (34.74%), Postives = 113/213 (53.05%), Query Frame = 3
Query:   63 VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTE--KDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            VR++ HT  + + G+  K   + EI++ G TI  ++ YA       I      +    +D+I VTKGKG++GVV R+GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+H RT  N ++ K              FD  +   DI   GGF +YGIV++DY+++ G   GP KR++ +R     + +R A+E I+   +   S+ G
Sbjct:  132 VRLMVHTNPQLVSGVPSKTPEIFEIRIGGSTIENRIKYAKERLGSNISFSDFSKPGNFVDVIAVTKGKGFQGVVKRFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK--------------FDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMRDP--ARQTRPAVESIEVTYVSRESKQG 328          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.418e-30
Identity = 73/215 (33.95%), Postives = 116/215 (53.95%), Query Frame = 3
Query:   57 SVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKXXVIDTSSRLG 695
            S VR + +T  + + G+ +K   +ME  ++   +  K +Y+       + V  VF+   ++D   +T GKG +G V RWG+  +  K  R   LR+V  +GA++P+RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E     I   S+ G
Sbjct:  139 SDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVDTAAITIGKGTQGPVKRWGIQLMKGKHSRQGSLRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.230e-29
Identity = 73/186 (39.25%), Postives = 109/186 (58.60%), Query Frame = 3
Query:   66 RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQ 617
            R+L  TQ RK+  L +K   L+EIQ+ GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+
Sbjct:  158 RLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327          
BLAST of EY659415 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.740e-29
Identity = 74/214 (34.58%), Postives = 116/214 (54.21%), Query Frame = 3
Query:    9 PEEKYPSSAGEVKKYASV-----VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK--QIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSL 623
            PEE+     G+++          VRV+ HT    +  + +K+  +ME +V GG+++++VD+A    +   +  V  VF+  E  D+ G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG                + D++P GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct:  117 PEEQSGDIEGDIRTALDEGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFALDLVDDGGEHTVTDVFRAGEYTDVAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314          
The following BLAST results are available for this feature:
BLAST of EY659415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_SULIM2.479e-3037.3250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL2.479e-3037.3250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK2.479e-3037.3250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIA2.479e-3037.3250S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_METS32.479e-3035.5150S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_METHJ2.479e-3037.0750S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_PICTO7.211e-3034.7450S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_METAC9.418e-3033.9550S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_SULSO1.230e-2939.2550S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_NATPD2.740e-2934.5850S ribosomal protein L3P OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659415 ID=EY659415; Name=EY659415; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGTCAAGAAG
TATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAA
GGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAATGGTG
GCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAA
ATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGG
TGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTA
CCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATT
GGTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCA
GAATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTG
GCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACT
GAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAA
AGATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGG
TGGTCACTCTTCGTCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTCTT
GAGGAAATCAAAATNNCAGTCATTGATACCTCTTCCAGGTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATATGCTAAAAAGTCAAGAGTTTTGCACCGTTATAGTTAATTCA
GCCAGTCTAAATTTATCCCAGTTGACTATCTNGGAACAGTTTTTGAGCCT
GGCATCAGCTGGGNNTCTTCCAGGNTTCTTTTTCCTTTCCCTTGNNNCTT
TN
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