EY659409

Overview
NameEY659409
Unique NameEY659409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:306..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659409 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 41/146 (28.08%), Postives = 74/146 (50.68%), Query Frame = 3 
Query:   87 VKIGINGFGRIGRLVARVIL---QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIIS---APSKDAPMFVVGVNENEYK 506
            +++ INGFGR+GR V R +    Q   +++VA+N+     + + ++ KYD+ HG+++     V D++ L+     +T+    N  ++PWA+   + V+E TGV                 V+ S    P  DA + ++G+NE   K
Sbjct:    2 IRVAINGFGRVGRNVLRALYETGQNKQIQIVAINE-LAEPEGVAHLLKYDTAHGRFRFPV--VLDNQQLVVAGDHITLLQQENIRDLPWAQLDIDVVLECTGVNNERVHGEQHIAQGAKKVLFSQPCGPDVDATI-IMGINEESLK 143
[Close]
BLAST of EY659409 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 43/141 (30.50%), Postives = 77/141 (54.61%), Query Frame = 3 
Query:   87 VKIGINGFGRIGRLVARVILQ--RD-DVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM---FVVGVN 491
            +KI ING+GRIGR V R + +  RD ++++VA+N+     + M ++ ++D+ HG++++         ++L GE  +++F  ++P  +PW   G + V++ TGVF                V+ S P+ DA +    V GVN
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINE-LAAPEAMVHLTRFDTSHGRFRYPVQLA--GHSMLVGEDLISLFAEQDPANLPWRALGVDVVLDCTGVFGSRADAELHLGAGAGKVLFSHPA-DADVDATIVYGVN 138
The following BLAST results are available for this feature:
BLAST of EY659409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
E4PD_PSEA69.885e-1128.08D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_AERS49.885e-1130.50D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659409 ID=EY659409; Name=EY659409; organism=Citrus sinensis; type=EST; length=515bp
CCACGCGTCCGGCTCTCCCTACTCTCTACAACTTTCTTCACCACTCTTTC
ACCGCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAAT
CAACGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGA
GGGACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGAT
TACATGACATACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCA
CCATGAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGC
CTGTCACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
ACTGGAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACTGACAAGGA
TAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAG
CCCCCAGCAAGGATGCTCCTATGTTTGTTGTCGGTGTCAATGAAAACGAG
TACAAACCAGAGCTC
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