EY659406

Overview
NameEY659406
Unique NameEY659406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659406 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.165e-20
Identity = 27/63 (42.86%), Postives = 37/63 (58.73%), Query Frame = 2 
Query:  359 IIADVKETGNIRRFFPSEFGNDVDRVHAAEPAKSAFATKAKIRRAVEAEGIPDTYVAANVFAA 547
            ++  +K    I+RF PSEFG+DVDR    EP  + +  K  +RRAVE  GIP T +  N  A+
Sbjct:  104 LLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIAS 166

HSP 2 Score: 43.8986 bits (102), Expect = 4.165e-20
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 1 
Query:   82 KSDILFIGGTGYIGMFIVQTSVKTGHPTVELVRESTLSAASKSQLLDHLSKNSASISTSEMCVNH*SLVNDI---KQLDVVISTVGHSLLGD 348
            K+  L +GGTG+IG FI + S+  G+PT  LVR   +S  SK+ ++       A +      +N    +  I    ++DVVIS VG + L D
Sbjct:   12 KNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYG--VINDKECMEKILKEYEIDVVISLVGGARLLD 100

HSP 3 Score: 38.1206 bits (87), Expect = 4.165e-20
Identity = 16/46 (34.78%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:  586 PPRDKVVVLSDGHSTAVYNEEHDIGTYTIIAGDDARHLNEILYMKP 723
            PP D+  +  DG++ A + + +DIG +T+   DD R LN+ ++ +P
Sbjct:  180 PPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRP 225
The following BLAST results are available for this feature:
BLAST of EY659406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN4.165e-2042.86Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-G08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659406 ID=EY659406; Name=EY659406; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGGCAAAACAAGCAGGAAAAAAAGGAAAGAATCCCCGAAAT
TGAACTGAACGAGTACTCGGCAATGGCGCCTAAAAGTGATATTCTATTCA
TCGGTGGGACAGGGTACATCGGCATGTTCATCGTCCAAACGAGCGTGAAA
ACCGGTCACCCTACGGTCGAGCTCGTGAGAGAATCCACACTCTCCGCTGC
TTCGAAATCTCAGCTCCTCGATCATCTGTCAAAAAACTCGGCGTCTATCT
CGACATCGGAGATGTGTGTGAATCACTAGAGCTTGGTGAATGATATAAAA
CAATTGGACGTGGTGATATCAACGGTCGGACACTCTTTATTAGGAGATGC
AGGACAAGATTATTGCGGACGTTAAAGAGACTGGTAACATTAGGAGATTC
TTCCCTTCAGAATTTGGGAATGATGTTGATCGAGTCCATGCCGCTGAGCC
TGCAAAATCAGCATTTGCCACTAAGGCTAAAATCCGCCGAGCCGTTGAGG
CTGAAGGGATTCCGGATACTTATGTAGCGGCGAATGTCTTTGCTGCTGAC
TTCCTTCCCTATTTGACGGAACCCGTGCCACTGCCCCACCTAGAGATAAA
GTTGTCGTCTTAAGCGATGGACACTCTACAGCTGTTTATAACGAGGAACA
TGATATTGGAACCTATACTATCATAGCGGGTGATGATGCCAGACACTTGA
ACGAAATCCTTTACATGAAACCCCATGAGATACTTGCTCATTCGATGATC
TTGGGCCCCTGTGGGAGAGAACATTGCCAAACCCTCGAACGGTGTACATT
GCCGGAGAGCAGTTCTAGAAATATCAAGATCTGCACCTCCGCAATGTGAA
TATCATTCAGAACCTGTTTCCTTAGGGAGACAACCACTTCA
back to top