EY659404

Overview
NameEY659404
Unique NameEY659404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 5.692e-59
Identity = 122/187 (65.24%), Postives = 138/187 (73.80%), Query Frame = 2
Query:  143 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFARWASTHYDECRRNWKSGMLENPAK 691
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFA+             +SG    PAK
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 195          

HSP 2 Score: 95.5153 bits (236), Expect = 4.409e-19
Identity = 55/95 (57.89%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  559 LGYLGRQRTRKIIPM*ACFRQMGINPL**VPEKLEKWHAGEPR*VIRQRYREAADIIRKGKMCCLMIHDLDARAGPMGGTTQYTVTTNGY-ATLM 840
            LG  G +   K       F +MGINP+     +LE  +AGEP  +IRQRYREAADII+KGKMCCL I+DLDA AG MGGTTQYTV      ATLM
Sbjct:  152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 246          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 228.024 bits (580), Expect = 5.692e-59
Identity = 123/191 (64.40%), Postives = 139/191 (72.77%), Query Frame = 2
Query:  143 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFARWASTHYDECRRNWKSGMLENPAK 691
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFA+   T         +SG    PAK
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAK 200          

HSP 2 Score: 87.4261 bits (215), Expect = 1.201e-16
Identity = 51/95 (53.68%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  559 LGYLGRQRTRKIIPM*ACFRQMGINPL**VPEKLEKWHAGEPR*VIRQRYREAADIIRKGKMCCLMIHDLDARAGPMGGTTQYTVTTNGY-ATLM 840
            LG  G +   K       F +MGI P+     +LE  +AGEP  +IRQRYREA+D+I+KGKM CL I+DLDA AG MGGTTQYTV      ATLM
Sbjct:  157 LGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 251          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.958e-57
Identity = 112/163 (68.71%), Postives = 129/163 (79.14%), Query Frame = 2
Query:  143 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAR 622
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFA+
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAK 169          

HSP 2 Score: 88.5817 bits (218), Expect = 5.390e-17
Identity = 54/95 (56.84%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  559 LGYLGRQRTRKIIPM*ACFRQMGINPL**VPEKLEKWHAGEPR*VIRQRYREAADIIRKGKMCCLMIHDLDARAGPMGGTTQYTVTTNGY-ATLM 840
            LG  G +   K       F +MGINP+     +LE  + GEP  +IRQRYREAADII KGKMCCL I+DLDA AG MGGTTQYTV      ATLM
Sbjct:  149 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 242          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.505e-55
Identity = 115/215 (53.49%), Postives = 140/215 (65.12%), Query Frame = 2
Query:  110 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFARWASTHYDECRRNWKSGMLENPAK*SGRGTVRQLTLSGRGKCAA 751
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFA+             +SG    PAK   +       L  +GK  A
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCA 222          

HSP 2 Score: 85.5001 bits (210), Expect = 4.563e-16
Identity = 50/95 (52.63%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  559 LGYLGRQRTRKIIPM*ACFRQMGINPL**VPEKLEKWHAGEPR*VIRQRYREAADIIRKGKMCCLMIHDLDARAGPMGGTTQYTVTTNGY-ATLM 840
            LG  G +   K       F ++GINP+     +LE  +AGEP  +IRQRYREAAD+I KGKMC L I+DL+  AG MGGTTQYTV      ATLM
Sbjct:  159 LGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLM 253          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.505e-55
Identity = 114/186 (61.29%), Postives = 133/186 (71.51%), Query Frame = 2
Query:  143 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFARWASTHYDECRRNWKSGMLENPAK 691
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFA+             +SG    PAK
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 194          

HSP 2 Score: 94.3597 bits (233), Expect = 9.822e-19
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  559 LGYLGRQRTRKIIPM*ACFRQMGINPL**VPEKLEKWHAGEPR*VIRQRYREAADIIRKGKMCCLMIHDLDARAGPMGGTTQYTVTTNGY-ATLM 840
            LG  G +   K       F +MGINP+     +LE  +AGEP  +IRQRYREAAD+I+KGKMCCL I+DLDA AG MGGTTQYTV      ATLM
Sbjct:  151 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 245          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.844e-33
Identity = 78/166 (46.99%), Postives = 100/166 (60.24%), Query Frame = 2
Query:  203 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFARWASTHYDECRRNWKSGMLENPAK 691
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + +             +SG    PAK
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAK 177          

HSP 2 Score: 80.8777 bits (198), Expect = 1.124e-14
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  559 LGYLGRQRTRKIIPM*ACFRQMGINPL**VPEKLEKWHAGEPR*VIRQRYREAADIIRKGKMCCLMIHDLDARAGPMGGTTQYTVTTNGY-ATLM 840
            LG  G +   K       ++++GI P+     +LE  +AGEP  +IR RYREA+DII+KG+MC L I+DLDA AG MG TTQYTV      ATLM
Sbjct:  134 LGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLM 228          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.597e-22
Identity = 52/95 (54.74%), Postives = 53/95 (55.79%), Query Frame = 2
Query:  296 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGK 580
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK 57          

HSP 2 Score: 40.0466 bits (92), Expect = 3.597e-22
Identity = 28/73 (38.36%), Postives = 35/73 (47.95%), Query Frame = 1
Query:  619 QMGINPL**VPEKLEKWHAGEPR*VIRQRYREAADIIRKGKMCCLMIHDLDARAGPMGGTTQYTVTTNGYATL 837
            +MGINP+     +LE  +AGEP                  KMCCL I+DLDA A    G     VT N ++TL
Sbjct:   57 KMGINPIMMSAGELESGNAGEP-----------------AKMCCLFINDLDAGA----GRVPIIVTGNDFSTL 108          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.468e-14
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:  473 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAR 622
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F +
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEK 53          
BLAST of EY659404 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.504e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:  473 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAR 622
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F +
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEK 53          
The following BLAST results are available for this feature:
BLAST of EY659404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ5.692e-5965.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE5.692e-5964.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU6.958e-5768.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.505e-5553.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU8.505e-5561.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.844e-3346.99Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY3.597e-2254.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.468e-1470.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP2.504e-1468.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-G06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659404 ID=EY659404; Name=EY659404; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGCACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTGCA
TTACAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCT
AGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGC
AACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAA
GCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACT
GCTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCT
TGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTG
CTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCT
GTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTT
GGACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGC
TTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTT
CCTCTCATCTTGGGTATTTGGGGAGGCAAAGGACAAGGAAAATCATTCCA
ATGTGAGCTTGTTTTCGCCAGATGGGCATCAACCCATTATGATGAGTGCC
GGAGAAATTGGAAAAGTGGCATGCTGGAGAACCCCGCTAAGTGATCAGGC
AGAGGTACCGTGAGGCAGCTGACATTATCAGGAAGGGGAAAATGTGCTGC
CTCATGATTCATGATCTTGATGCAAGAGCTGGTCCTATGGGTGGCACCAC
CCAGTACACAGTAACAACAAATGGTTACGCCACCCTCATGACATGGCTGA
AAACCAACTGTGCCCACTCCCTGTATGAACACAAGGAGAAAACCCCGGGT
CCCAT
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