EY659394

Overview
NameEY659394
Unique NameEY659394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12605 contig Csv1_Contig12605:810..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_THETH (Malate dehydrogenase OS=Thermus thermophilus GN=mdh PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  218 FIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_THET8 (Malate dehydrogenase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  218 FIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_THET2 (Malate dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEE 318
            FI TV QRGAAII+AR             +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT ++G + +V+GL I+EF+RK++++TA+EL +E
Sbjct:  218 FIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDE 317          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_THEFY (Malate dehydrogenase OS=Thermobifida fusca (strain YX) GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 57/105 (54.29%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            +R  FI TV +RGAAII+AR             DH+ DWV GTPEG W S+ + SDGSY VP GL+ SFPV  RNG W IVQGL I+EFSR+++D +  EL EE+
Sbjct:  216 LRDTFIPTVAKRGAAIIEARGASSAASAANAAIDHVYDWVNGTPEGDWTSVALPSDGSYGVPEGLVSSFPVVSRNGSWEIVQGLEINEFSRERIDASVRELEEER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_BDEBA (Malate dehydrogenase OS=Bdellovibrio bacteriovorus GN=mdh PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            FI TV +RGAAII+AR             DHIRDW LGT  G WV+MG+ SDGSY++P G++Y FPVTC+NGE+ IV+GL ID FSR+K++ T +EL+EEK
Sbjct:  229 FIPTVGKRGAAIIEARGLSSAASAASAAVDHIRDWWLGT-NGEWVTMGIPSDGSYDIPEGIMYGFPVTCKNGEYEIVKGLEIDAFSREKMNNTLKELNEEK 328          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCLE (Malate dehydrogenase OS=Mycobacterium leprae GN=mdh PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 58/101 (57.43%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   19 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            FI TV +RGAAII AR             D  RDW+LGTPEG WVSM V SDGSY VP GLI SFPVT  +G+WTIV+GL ID+FSR ++D +  EL++E+
Sbjct:  220 FIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPEGNWVSMAVVSDGSYGVPEGLISSFPVTTTDGDWTIVRGLGIDDFSRGRIDKSTAELADER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_PSYCK (Malate dehydrogenase OS=Psychrobacter cryohalolentis (strain K5) GN=mdh PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.569e-26
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   13 GEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSI-DEFSRKKLDLTAEELSEEK 321
            G +I  VQQRGAAIIKAR              H+R WV+GT E  WVSMGVYS+G Y +  GLIYSFPVTC NG+W+IV G+ +  +FS++K+  T +ELSEE+
Sbjct:  218 GTYIPEVQQRGAAIIKARGASSAASAANAAIAHVRTWVMGTDENDWVSMGVYSNGEYGIAKGLIYSFPVTCANGDWSIVDGVDVSSDFSKEKMAATEQELSEER 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_DEIRA (Malate dehydrogenase OS=Deinococcus radiodurans GN=mdh PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.273e-26
Identity = 54/102 (52.94%), Postives = 71/102 (69.61%), Query Frame = 1
Query:   16 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEK 321
            ++I TV +RGAAII+AR             DH+ DW LGT +G WVSMG+ SDGSY +P GLIY FPV  ++G++ IVQGL + +FSR K+D TA+EL EE+
Sbjct:  219 DYIPTVAKRGAAIIEARGASSAASAASAAIDHMHDWALGTKDGEWVSMGIPSDGSYGIPEGLIYGFPVRVKDGKYEIVQGLDVSDFSRGKMDATAQELEEER 320          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCTU (Malate dehydrogenase OS=Mycobacterium tuberculosis GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            +  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  216 IEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
BLAST of EY659394 vs. ExPASy Swiss-Prot
Match: MDH_MYCTA (Malate dehydrogenase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=mdh PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 58/106 (54.72%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    7 VRGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCRNGEWTIVQGLSIDEFSRKKLDLTAEELSEEKA 324
            +  EFI TV +RGAAII AR             D  RDW+LGTP   WVSM V SDGSY VP GLI SFPVT + G WTIV GL IDEFSR ++D +  EL++E++
Sbjct:  216 IEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERS 321          
The following BLAST results are available for this feature:
BLAST of EY659394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
MDH_THETH1.914e-2654.00Malate dehydrogenase OS=Thermus thermophilus GN=md... [more]
MDH_THET81.914e-2654.00Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THET21.914e-2654.00Malate dehydrogenase OS=Thermus thermophilus (stra... [more]
MDH_THEFY2.500e-2654.29Malate dehydrogenase OS=Thermobifida fusca (strain... [more]
MDH_BDEBA2.500e-2657.43Malate dehydrogenase OS=Bdellovibrio bacteriovorus... [more]
MDH_MYCLE3.265e-2657.43Malate dehydrogenase OS=Mycobacterium leprae GN=md... [more]
MDH_PSYCK5.569e-2653.85Malate dehydrogenase OS=Psychrobacter cryohalolent... [more]
MDH_DEIRA7.273e-2652.94Malate dehydrogenase OS=Deinococcus radiodurans GN... [more]
MDH_MYCTU9.499e-2654.72Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]
MDH_MYCTA9.499e-2654.72Malate dehydrogenase OS=Mycobacterium tuberculosis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659394 ID=EY659394; Name=EY659394; organism=Citrus sinensis; type=EST; length=543bp
CCACGCGTCCGTGGAGAATTCATAACCACAGTCCAACAACGTGGTGCTGC
AATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTGCTAGCTCTG
CTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAGGGCACCTGG
GTCTCCATGGGGGTATACTCTGATGGTTCATACAATGTACCAGCTGGGCT
CATTTACTCATTCCCAGTAACCTGCCGCAACGGTGAATGGACAATTGTTC
AAGGACTCAGCATTGATGAATTCTCAAGGAAGAAGTTGGACTTGACAGCA
GAGGAGCTCTCCGAGGAGAAGGCCCTCGCATACTCATGTCTCTCTTAAAT
GCTTTCTTCCCTTCAATAGTGTGTTACCAAGGCCCTTAGCTTTGTCTGAG
TAGTTGGTATAGTTACAGTTTCGAATAAAACCATTGTTGAAACCTGGAGG
AACCATTGATGATGGAGAAGGCTTTCCATCTTATGTTGCTATTTCTGCAT
TTGAATATCGGGATTTTGGAGTTTTGTCTTCCCCGGGGAATAA
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