EY659393

Overview
NameEY659393
Unique NameEY659393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.119e-36
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN K++VCDIPPRGLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_DROHY (Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.119e-36
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN K++VCDIPPRGLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.119e-36
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN K++VCDIPPRGLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_HOMAM (Tubulin beta-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.119e-36
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK++VCDIPPRG+KMASTFIGNST+I E+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  346 VEWIPNNVKTAVCDIPPRGIKMASTFIGNSTAIHELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 423
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.767e-36
Identity = 70/78 (89.74%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK++VCDIPPR LKMA+TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VDWIPNNVKTAVCDIPPRDLKMAATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB6_MOUSE (Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.767e-36
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK +VCDIPPRGLKMASTFIGNST+IQE+F+R+SEQF+AMFRRKAFLHW+TGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB6_HUMAN (Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.767e-36
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK +VCDIPPRGLKMASTFIGNST+IQE+F+R+SEQF+AMFRRKAFLHW+TGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB5_CHICK (Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.767e-36
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK +VCDIPPRGLKMASTFIGNST+IQE+F+R+SEQF+AMFRRKAFLHW+TGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVKVAVCDIPPRGLKMASTFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.767e-36
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+KSSVCDIPP+GLKM++ FIGNST+IQEMF+R+ EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  317 VEWIPNNIKSSVCDIPPKGLKMSACFIGNSTAIQEMFKRIGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 394
[Close]
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.767e-36
Identity = 72/78 (92.31%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVKSSVCDIPP GLKMA TFIGNSTSIQEMFRRV +QFTAMFR KAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  310 VEWIPNNVKSSVCDIPPVGLKMACTFIGNSTSIQEMFRRVRDQFTAMFRXKAFLHWYTGEGMDEMEFTEAESNMNDLV 387
The following BLAST results are available for this feature:
BLAST of EY659393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TBB2_DROME2.119e-3688.46Tubulin beta-2 chain OS=Drosophila melanogaster GN... [more]
TBB2_DROHY2.119e-3688.46Tubulin beta-2 chain OS=Drosophila hydei GN=betaTu... [more]
TBB2_DROER2.119e-3688.46Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]
TBB1_HOMAM2.119e-3688.46Tubulin beta-1 chain OS=Homarus americanus PE=2 SV... [more]
TBB_ONCGI2.767e-3689.74Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE... [more]
TBB6_MOUSE2.767e-3688.46Tubulin beta-6 chain OS=Mus musculus GN=Tubb6 PE=1... [more]
TBB6_HUMAN2.767e-3688.46Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1... [more]
TBB5_CHICK2.767e-3688.46Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBB2_OOMCK2.767e-3687.18Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]
TBB2_ANEPH2.767e-3692.31Tubulin beta-2 chain (Fragment) OS=Anemia phylliti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659393 ID=EY659393; Name=EY659393; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGGTGGATCCCCAACAATGTGAAGTCCAGCGTGTGCGATAT
TCCACCACGTGGTCTGAAGATGGCATCTACTTTTATTGGTAACTCAACAT
CCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTTTACTGCCATGTTC
CGGCGTAAGGCCTTTTTGCATTGGTATACTGGGGAGGGTATGGATGAGAT
GGAGTTCACTGAGGCAGAGAGCAACATGAATGACTTGGTGGCTGAGTACC
AACAATATCAGGATGCAACAGCTGATGATGAGGAAGAGTATGAGGAGGGC
CTTGACGAGAACTACGAGGGCTAAGAAAGGGTAGCAATCAAAGGGCAACC
ACAGAAAAAGAACGCTTGATGAGACCAACTCCCTTGTACTGTGGCTTCTT
TTGTTGTTGTTTACAATTTCTGTCTTTTAAGACGATATTGTTTGTTGTTC
TTTTCGAGCATTTGAATAAAGAATTGTTAGTTTGATCACCTT
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