EY659393

Overview
NameEY659393
Unique NameEY659393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.614e-36
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            + WIPNN+KSSVCDIPP+GLKMA TFIGN+T IQEMFRRV EQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 IEWIPNNIKSSVCDIPPKGLKMAVTFIGNNTCIQEMFRRVGEQFTLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.614e-36
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIP+N KSSVCDIPP+GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.614e-36
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIP+N KSSVCDIPP+GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.614e-36
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIP+N KSSVCDIPP+GLKMA TF+GNST+IQ+MF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPHNTKSSVCDIPPKGLKMAVTFVGNSTAIQDMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.721e-36
Identity = 68/78 (87.18%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+KS VCDIPP+GLKM+ TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNMKSGVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB3_DROME (Tubulin beta-3 chain OS=Drosophila melanogaster GN=betaTub60D PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 4.721e-36
Identity = 67/78 (85.90%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK++VCDIPP+GLKM+STFIGN+T+IQE+F+R+SEQF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  348 VEWIPNNVKTAVCDIPPKGLKMSSTFIGNTTAIQELFKRISEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 425          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB8_PANTR (Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36
Identity = 67/76 (88.16%), Postives = 76/76 (100.00%), Query Frame = 1
Query:   13 WIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            W+PNNVK++VCDIPPRGLKM++TFIGN+T+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  344 WLPNNVKTAVCDIPPRGLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36
Identity = 67/76 (88.16%), Postives = 76/76 (100.00%), Query Frame = 1
Query:   13 WIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            W+PNNVK++VCDIPPRGLKM++TFIGN+T+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  344 WLPNNVKTAVCDIPPRGLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.165e-36
Identity = 66/78 (84.62%), Postives = 76/78 (97.44%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+K+SVCDIPP+GLKM+STF+GNST+IQEMF+RV EQFTAM++RKAFLHWYTGEGMD+MEFTEAESNMNDLV
Sbjct:  342 VEWIPNNIKASVCDIPPKGLKMSSTFVGNSTAIQEMFKRVGEQFTAMYKRKAFLHWYTGEGMDDMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_GIALA (Tubulin beta chain OS=Giardia lamblia PE=2 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 8.052e-36
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+K SVCDIPPRGLKMA+TFIGNST IQE+F+RV EQF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNMKVSVCDIPPRGLKMAATFIGNSTCIQELFKRVGEQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
The following BLAST results are available for this feature:
BLAST of EY659393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TBB_TRYBR3.614e-3688.46Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB_PLAFK3.614e-3688.46Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_PLAF73.614e-3688.46Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_BABBO3.614e-3688.46Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]
TBB_EIMTE4.721e-3687.18Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB3_DROME4.721e-3685.90Tubulin beta-3 chain OS=Drosophila melanogaster GN... [more]
TBB8_PANTR6.165e-3688.16Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 P... [more]
TBB8_HUMAN6.165e-3688.16Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]
TBB3_OOMCK6.165e-3684.62Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB_GIALA8.052e-3688.46Tubulin beta chain OS=Giardia lamblia PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659393 ID=EY659393; Name=EY659393; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGGTGGATCCCCAACAATGTGAAGTCCAGCGTGTGCGATAT
TCCACCACGTGGTCTGAAGATGGCATCTACTTTTATTGGTAACTCAACAT
CCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTTTACTGCCATGTTC
CGGCGTAAGGCCTTTTTGCATTGGTATACTGGGGAGGGTATGGATGAGAT
GGAGTTCACTGAGGCAGAGAGCAACATGAATGACTTGGTGGCTGAGTACC
AACAATATCAGGATGCAACAGCTGATGATGAGGAAGAGTATGAGGAGGGC
CTTGACGAGAACTACGAGGGCTAAGAAAGGGTAGCAATCAAAGGGCAACC
ACAGAAAAAGAACGCTTGATGAGACCAACTCCCTTGTACTGTGGCTTCTT
TTGTTGTTGTTTACAATTTCTGTCTTTTAAGACGATATTGTTTGTTGTTC
TTTTCGAGCATTTGAATAAAGAATTGTTAGTTTGATCACCTT
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