EY659393

Overview
NameEY659393
Unique NameEY659393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.052e-35
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIP+N KSSVCDIPP GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPHNTKSSVCDIPPLGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_ENTDO (Tubulin beta chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.373e-35
Identity = 67/78 (85.90%), Postives = 76/78 (97.44%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK++VCDIPP GL+M++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVKTAVCDIPPTGLEMSATFIGNSTAIQEIFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.373e-35
Identity = 67/78 (85.90%), Postives = 76/78 (97.44%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK +VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQF+AMFRRKAFLHW+TGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVKVAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFSAMFRRKAFLHWFTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 67/78 (85.90%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+++++C IPPRGLKM+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNIQTALCAIPPRGLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_EPITY (Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 67/78 (85.90%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+++++C IPPRGLKM+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNIQTALCAIPPRGLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB8_PAPHA (Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 66/76 (86.84%), Postives = 76/76 (100.00%), Query Frame = 1
Query:   13 WIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            W+P+NVK++VCDIPPRGLKM++TFIGN+T+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  344 WLPHNVKTAVCDIPPRGLKMSATFIGNNTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 65/78 (83.33%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK+S+CDIPP+GLKM++TF+GN+T+IQE+++RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_ECHMU (Tubulin beta-1 chain OS=Echinococcus multilocularis GN=TUB-1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.343e-35
Identity = 67/78 (85.90%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK++VCDIPPRGLKM+ TF+GN+T+IQE+F+RVSEQFT MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVKTAVCDIPPRGLKMSVTFMGNTTAIQEIFKRVSEQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_VENIN (Tubulin beta chain OS=Venturia inaequalis PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.060e-35
Identity = 66/78 (84.62%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C IPPRGLKM+STF+GNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVQTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.060e-35
Identity = 66/78 (84.62%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C IPPRGLKM+STF+GNSTSIQE+F+RV +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVQTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
The following BLAST results are available for this feature:
BLAST of EY659393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TBB_PLAFA1.052e-3588.46Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB_ENTDO1.373e-3585.90Tubulin beta chain OS=Enteroctopus dofleini PE=2 S... [more]
TBB6_BOVIN1.373e-3585.90Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB_METAN2.343e-3585.90Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]
TBB_EPITY2.343e-3585.90Tubulin beta chain OS=Epichloe typhina GN=TUBB PE=... [more]
TBB8_PAPHA2.343e-3586.84Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 P... [more]
TBB6_ECTVR2.343e-3583.33Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]
TBB1_ECHMU2.343e-3585.90Tubulin beta-1 chain OS=Echinococcus multiloculari... [more]
TBB_VENIN3.060e-3584.62Tubulin beta chain OS=Venturia inaequalis PE=3 SV=... [more]
TBB_UNCNE3.060e-3584.62Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659393 ID=EY659393; Name=EY659393; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGGTGGATCCCCAACAATGTGAAGTCCAGCGTGTGCGATAT
TCCACCACGTGGTCTGAAGATGGCATCTACTTTTATTGGTAACTCAACAT
CCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTTTACTGCCATGTTC
CGGCGTAAGGCCTTTTTGCATTGGTATACTGGGGAGGGTATGGATGAGAT
GGAGTTCACTGAGGCAGAGAGCAACATGAATGACTTGGTGGCTGAGTACC
AACAATATCAGGATGCAACAGCTGATGATGAGGAAGAGTATGAGGAGGGC
CTTGACGAGAACTACGAGGGCTAAGAAAGGGTAGCAATCAAAGGGCAACC
ACAGAAAAAGAACGCTTGATGAGACCAACTCCCTTGTACTGTGGCTTCTT
TTGTTGTTGTTTACAATTTCTGTCTTTTAAGACGATATTGTTTGTTGTTC
TTTTCGAGCATTTGAATAAAGAATTGTTAGTTTGATCACCTT
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