EY659393

Overview
NameEY659393
Unique NameEY659393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 6.817e-35
Identity = 65/78 (83.33%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C IPPRGLKM+STF+GN+T+IQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVQTALCSIPPRGLKMSSTFVGNATAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.903e-35
Identity = 65/78 (83.33%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C IPPRGLKM+STF+GNSTSIQE+F+RV +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVQTALCSIPPRGLKMSSTFVGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PHANO (Tubulin beta chain OS=Phaeosphaeria nodorum GN=tubA PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 63/78 (80.77%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C +PPRGLKM++TF+GNSTSIQE+F+R+ +QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVQTALCSVPPRGLKMSATFVGNSTSIQELFKRIGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_GIBZE (Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+++++C IPPRGL M+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNIQTALCAIPPRGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+++++C IPPRGL M+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNIQTALCAIPPRGLTMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PENDI (Tubulin beta chain OS=Penicillium digitatum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.519e-34
Identity = 64/78 (82.05%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C +PPRGLKM+STF+GNSTSIQE+F+RV +QF AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVQTALCSVPPRGLKMSSTFVGNSTSIQELFKRVGDQFAAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.519e-34
Identity = 65/74 (87.84%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 228
            V WIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM
Sbjct:  268 VEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 341          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_ACRCO (Tubulin beta chain OS=Acremonium coenophialum GN=TUB2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.519e-34
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+++++C IPPR LKM+STFIGNSTSIQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNIQTALCAIPPRDLKMSSTFIGNSTSIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.519e-34
Identity = 65/78 (83.33%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C IPPRGLKM+ TF+GNST+IQE+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNVQTALCSIPPRGLKMSFTFVGNSTAIQELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.983e-34
Identity = 64/78 (82.05%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+KSSVCDIPP+G+KM++TFIGN+T IQE+F+R+  QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 VEWIPNNIKSSVCDIPPKGMKMSATFIGNNTCIQELFKRIGLQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
The following BLAST results are available for this feature:
BLAST of EY659393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TBB2_COLGL6.817e-3583.33Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB_MYCGR8.903e-3583.33Tubulin beta chain OS=Mycosphaerella graminicola G... [more]
TBB_PHANO1.163e-3480.77Tubulin beta chain OS=Phaeosphaeria nodorum GN=tub... [more]
TBB_GIBZE1.163e-3484.62Tubulin beta chain OS=Gibberella zeae GN=TUB2 PE=3... [more]
TBB_GIBFU1.163e-3484.62Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB_PENDI1.519e-3482.05Tubulin beta chain OS=Penicillium digitatum GN=TUB... [more]
TBB_HALDI1.519e-3487.84Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBB_ACRCO1.519e-3484.62Tubulin beta chain OS=Acremonium coenophialum GN=T... [more]
TBB2_COLGR1.519e-3483.33Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB2_PHYPO1.983e-3482.05Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659393 ID=EY659393; Name=EY659393; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGGTGGATCCCCAACAATGTGAAGTCCAGCGTGTGCGATAT
TCCACCACGTGGTCTGAAGATGGCATCTACTTTTATTGGTAACTCAACAT
CCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTTTACTGCCATGTTC
CGGCGTAAGGCCTTTTTGCATTGGTATACTGGGGAGGGTATGGATGAGAT
GGAGTTCACTGAGGCAGAGAGCAACATGAATGACTTGGTGGCTGAGTACC
AACAATATCAGGATGCAACAGCTGATGATGAGGAAGAGTATGAGGAGGGC
CTTGACGAGAACTACGAGGGCTAAGAAAGGGTAGCAATCAAAGGGCAACC
ACAGAAAAAGAACGCTTGATGAGACCAACTCCCTTGTACTGTGGCTTCTT
TTGTTGTTGTTTACAATTTCTGTCTTTTAAGACGATATTGTTTGTTGTTC
TTTTCGAGCATTTGAATAAAGAATTGTTAGTTTGATCACCTT
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