EY659393

Overview
NameEY659393
Unique NameEY659393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_CANAL (Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.401e-32
Identity = 61/78 (78.21%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV+++VC +PP+ L M++TFIGNSTSIQE+F+RV +QF+AMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  342 VDWIPNNVQTAVCSVPPKDLDMSATFIGNSTSIQELFKRVGDQFSAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_SCHCO (Tubulin beta chain OS=Schizophyllum commune GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 62/78 (79.49%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV +S CDI PRGL+M+ TF+GNST+IQE+F+RVS+QFTAMF+RKAFLHWYT EGMDEMEFTEAESNM DLV
Sbjct:  342 VEWIPNNVLASQCDIAPRGLRMSVTFLGNSTAIQELFKRVSDQFTAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.052e-31
Identity = 61/78 (78.21%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV ++ CDIPPRG KMA TF+GNST+IQE+F+RV++QF AMF+RKAFLHWYT EGMDEMEFTEAESNM DLV
Sbjct:  342 VEWIPNNVLTAQCDIPPRGCKMAVTFLGNSTAIQELFKRVNDQFAAMFKRKAFLHWYTQEGMDEMEFTEAESNMQDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_UROFA (Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.501e-31
Identity = 61/78 (78.21%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV+++ CDI PR  KM+ TFIGNST+IQ++F+RV++QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM DLV
Sbjct:  342 VEWIPNNVQTAHCDIAPRAHKMSVTFIGNSTAIQDLFKRVADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMQDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.501e-31
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN++++ C +PP+GL ++STFIGNST+IQ  FRRV +QF+ MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  340 VEWIPNNIQTAHCSVPPKGLDVSSTFIGNSTAIQNSFRRVGDQFSLMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 417          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 61/76 (80.26%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   13 WIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            W+PNN+K++VCDIPP GLKM+ TF GN+T++QE+ +RVSEQFTA FRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  344 WLPNNIKTAVCDIPPWGLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 418          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV+++ C IPP G+  +STFIGNST+IQ++FRRV +QF+ MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  343 VEWIPNNVQTAHCSIPPVGMNASSTFIGNSTAIQDIFRRVGDQFSVMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 420          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN++++    PPRGLK++STF+GNST+IQE+FRRV EQF+AMFRR+AFLHWYT EGMDEMEFTEAESNMNDLV
Sbjct:  344 VEWIPNNIQTACALSPPRGLKISSTFVGNSTAIQEIFRRVGEQFSAMFRRQAFLHWYTSEGMDEMEFTEAESNMNDLV 421          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_YEAST (Tubulin beta chain OS=Saccharomyces cerevisiae GN=TUB2 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV+++VC + P+GL MA+TFI NSTSIQE+F+RV +QF+AMF+RKAFLHWYT EGMDE+EF+EAESNMNDLV
Sbjct:  342 VEWIPNNVQTAVCSVAPQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_DICDI (Tubulin beta chain OS=Dictyostelium discoideum GN=tubB PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 58/78 (74.36%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIP+N+KSS+CDIPP+G  MA TFIGN+T+IQ++F+R+S  F AMFRRKAFLHWYT EGM+E+EFTEAESNMNDLV
Sbjct:  347 VEWIPHNIKSSICDIPPKGTPMAVTFIGNNTAIQDLFKRISIHFQAMFRRKAFLHWYTLEGMEELEFTEAESNMNDLV 424          
The following BLAST results are available for this feature:
BLAST of EY659393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TBB_CANAL5.401e-3278.21Tubulin beta chain OS=Candida albicans GN=TUB2 PE=... [more]
TBB_SCHCO1.203e-3179.49Tubulin beta chain OS=Schizophyllum commune GN=TUB... [more]
TBB_PLESA2.052e-3178.21Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB_UROFA3.501e-3178.21Tubulin beta chain OS=Uromyces fabae GN=TBB1 PE=3 ... [more]
TBB1_COLGR3.501e-3175.64Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
TBB4Q_HUMAN4.572e-3180.26Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB1_COLGL4.572e-3176.92Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]
TBB1_TRIVI7.799e-3176.92Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB_YEAST1.737e-3074.36Tubulin beta chain OS=Saccharomyces cerevisiae GN=... [more]
TBB_DICDI2.964e-3074.36Tubulin beta chain OS=Dictyostelium discoideum GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659393 ID=EY659393; Name=EY659393; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGGTGGATCCCCAACAATGTGAAGTCCAGCGTGTGCGATAT
TCCACCACGTGGTCTGAAGATGGCATCTACTTTTATTGGTAACTCAACAT
CCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTTTACTGCCATGTTC
CGGCGTAAGGCCTTTTTGCATTGGTATACTGGGGAGGGTATGGATGAGAT
GGAGTTCACTGAGGCAGAGAGCAACATGAATGACTTGGTGGCTGAGTACC
AACAATATCAGGATGCAACAGCTGATGATGAGGAAGAGTATGAGGAGGGC
CTTGACGAGAACTACGAGGGCTAAGAAAGGGTAGCAATCAAAGGGCAACC
ACAGAAAAAGAACGCTTGATGAGACCAACTCCCTTGTACTGTGGCTTCTT
TTGTTGTTGTTTACAATTTCTGTCTTTTAAGACGATATTGTTTGTTGTTC
TTTTCGAGCATTTGAATAAAGAATTGTTAGTTTGATCACCTT
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