EY659393

Overview
NameEY659393
Unique NameEY659393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 55/78 (70.51%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV+++VCDIPPRG+KM++TFIGN+T+IQE+F+R+SEQF AMF RKAFLHWYTGEGM+E +F EA++N++DL+
Sbjct:  342 VEWIPNNVQTAVCDIPPRGMKMSATFIGNTTAIQEIFKRISEQFAAMFSRKAFLHWYTGEGMEEGDFAEADNNVSDLL 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.623e-30
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK++VCDIPP   K+A TFIGN+T+IQE+F RVS+QF+AMFRR+AFLH++T EGMDEMEF+EAESNMNDL+
Sbjct:  342 VEWIPNNVKTAVCDIPPIDFKVAGTFIGNTTAIQELFTRVSDQFSAMFRRRAFLHFFTSEGMDEMEFSEAESNMNDLI 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.471e-29
Identity = 56/78 (71.79%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++++C +PP+ +KM++TFI NSTSIQE+F+RV +QF+AMFRRKAFLHWYT EGMD  EF EAESNMNDLV
Sbjct:  342 VEWIPNNVQTAICSVPPKDVKMSATFIANSTSIQELFKRVGDQFSAMFRRKAFLHWYTNEGMDITEFAEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.509e-29
Identity = 58/78 (74.36%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNVK +VCDIPPRGL MA+TFIGN+T+IQE+F RVSE F+AMF+RKAF+HWYT EGMD  EF EAE+N++DLV
Sbjct:  342 VEWIPNNVKVAVCDIPPRGLSMAATFIGNNTAIQEIFNRVSEHFSAMFKRKAFVHWYTSEGMDINEFGEAENNIHDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_USTVI (Tubulin beta chain OS=Ustilago violacea PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 55/78 (70.51%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV+S+ C++ PRGLKM+ TFIGN+TSIQE+F+RV + F  MFRR+AFLHWYTGEGMDEMEF+EA +NM+DL+
Sbjct:  342 VEWIPNNVQSAHCEVAPRGLKMSVTFIGNNTSIQELFKRVGDHFDVMFRRRAFLHWYTGEGMDEMEFSEASANMHDLI 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            + WIPN +K+SVCD+ P G  M++ FIGNST+IQ++F+RV   F+AMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 IDWIPNAIKASVCDVAPTGETMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.277e-29
Identity = 56/78 (71.79%), Postives = 68/78 (87.18%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            + WIPN +K+SVCD+ P G  M++ FIGNST+IQ++F+RV   F+AMF+RKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  342 IDWIPNAIKASVCDVAPTGETMSAAFIGNSTAIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 4.429e-26
Identity = 47/78 (60.26%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNNV++SVC++PP+GL  ++TFI NST++QE+F R + QF+ MF+RK FLHWYTGEGM+ +EF+EA+S++ DL+
Sbjct:  344 VEWIPNNVQTSVCNVPPKGLTTSATFIANSTAVQELFERTANQFSVMFKRKGFLHWYTGEGMEPVEFSEAQSDLEDLI 421          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.289e-25
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIP+N+K+SVCDIP  G K++S FIGN+T+I+  F+R   QF +MFRRKAFLHWY  EGMDE+EF+EAESN+ DLV
Sbjct:  344 VEWIPHNIKTSVCDIPAAGEKISSAFIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEGMDELEFSEAESNLADLV 421          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.070e-24
Identity = 45/78 (57.69%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIPNN+K+++CDIPPRGLKM++TFIGN+T+IQ +F+R+ +   +M RRKA LHWYTGEGM+E EF +A+  +  ++
Sbjct:  341 VDWIPNNIKTAICDIPPRGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAII 418          
The following BLAST results are available for this feature:
BLAST of EY659393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TBB_BOMMO5.055e-3070.51Tubulin beta chain OS=Bombyx mori PE=2 SV=1[more]
TBB3_ECHMU8.623e-3074.36Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB1_GEOCN1.471e-2971.79Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]
TBB1_HUMAN2.509e-2974.36Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1... [more]
TBB_USTVI3.277e-2970.51Tubulin beta chain OS=Ustilago violacea PE=2 SV=1[more]
TBB_PORYE3.277e-2971.79Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB_PORPU3.277e-2971.79Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]
TBB2_GEOCN4.429e-2660.26Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]
TBB1_CHOCR1.289e-2565.38Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBBP_DROME7.070e-2457.69Probable tubulin beta chain CG32396 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659393 ID=EY659393; Name=EY659393; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGGTGGATCCCCAACAATGTGAAGTCCAGCGTGTGCGATAT
TCCACCACGTGGTCTGAAGATGGCATCTACTTTTATTGGTAACTCAACAT
CCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTTTACTGCCATGTTC
CGGCGTAAGGCCTTTTTGCATTGGTATACTGGGGAGGGTATGGATGAGAT
GGAGTTCACTGAGGCAGAGAGCAACATGAATGACTTGGTGGCTGAGTACC
AACAATATCAGGATGCAACAGCTGATGATGAGGAAGAGTATGAGGAGGGC
CTTGACGAGAACTACGAGGGCTAAGAAAGGGTAGCAATCAAAGGGCAACC
ACAGAAAAAGAACGCTTGATGAGACCAACTCCCTTGTACTGTGGCTTCTT
TTGTTGTTGTTTACAATTTCTGTCTTTTAAGACGATATTGTTTGTTGTTC
TTTTCGAGCATTTGAATAAAGAATTGTTAGTTTGATCACCTT
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