EY659393

Overview
NameEY659393
Unique NameEY659393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2350 contig Csv1_Contig2350:35..526. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.583e-23
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 240
            V WIP+NV  S+C +PP G   A+  + NST +QE+F+R  +QF  MF+R+AFLHWYTGEGMD MEFTEAESN  DL+
Sbjct:  346 VEWIPDNVSVSLCSVPPVGQPQAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESNTQDLI 423          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.754e-12
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLK--------MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 228
            V W P   K  +C  PP  +K         A   + N+T+I E +RR+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++
Sbjct:  345 VDWCPTGFKIGICYQPPTAIKGSELASASRAVCMLSNTTAIAEAWRRIDRKFDLMYSKRAFVHWYVGEGMEEGEFTEAREDL 426          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRGLK--------MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 228
            V W P   K  +CD PP+ ++         A   + N+TSI E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  344 VDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPRG--------LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 228
            V W P   K  +C  PP          +  A   + N+TSI E ++R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++
Sbjct:  345 VDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 426          
BLAST of EY659393 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.965e-11
Identity = 29/82 (35.37%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    7 VRWIPNNVKSSVCDIPPR--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 228
            V W P   K  +C  PP          +  A   + N+T+I + ++R+ ++F  M+ ++AF+HWY GEGM+E EFTEA  ++
Sbjct:  345 VDWCPTGFKIGICYEPPSVIPSSELANVDRAVCMLSNTTAIADAWKRIDQKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDL 426          
The following BLAST results are available for this feature:
BLAST of EY659393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TBB2_SUIBO4.583e-2360.26Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBA_CANAL4.754e-1239.02Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]
TBA2_SCHPO1.383e-1137.80Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA1_YEAST3.081e-1137.80Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA3_YEAST8.965e-1135.37Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659393 ID=EY659393; Name=EY659393; organism=Citrus sinensis; type=EST; length=492bp
CCACGCGTCCGGTGGATCCCCAACAATGTGAAGTCCAGCGTGTGCGATAT
TCCACCACGTGGTCTGAAGATGGCATCTACTTTTATTGGTAACTCAACAT
CCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTTTACTGCCATGTTC
CGGCGTAAGGCCTTTTTGCATTGGTATACTGGGGAGGGTATGGATGAGAT
GGAGTTCACTGAGGCAGAGAGCAACATGAATGACTTGGTGGCTGAGTACC
AACAATATCAGGATGCAACAGCTGATGATGAGGAAGAGTATGAGGAGGGC
CTTGACGAGAACTACGAGGGCTAAGAAAGGGTAGCAATCAAAGGGCAACC
ACAGAAAAAGAACGCTTGATGAGACCAACTCCCTTGTACTGTGGCTTCTT
TTGTTGTTGTTTACAATTTCTGTCTTTTAAGACGATATTGTTTGTTGTTC
TTTTCGAGCATTTGAATAAAGAATTGTTAGTTTGATCACCTT
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