EY659383

Overview
NameEY659383
Unique NameEY659383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:122..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.916e-46
Identity = 102/208 (49.04%), Postives = 133/208 (63.94%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    I+   + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKE++NGRLAMF+M GFF+Q +   KGP+     H++DP  N
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 249          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.916e-46
Identity = 101/208 (48.56%), Postives = 133/208 (63.94%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D ++PGG FDPLGLA DP+ FA LKVKE++NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:   39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 242          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.916e-46
Identity = 104/208 (50.00%), Postives = 132/208 (63.46%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRTC-*HLSDPFAN 856
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PGG FDPLGLA DPD FA LKVKE++NGRLAMF+M GFF+Q +   KGP++    H++DP AN
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVAN 252          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.165e-45
Identity = 102/208 (49.04%), Postives = 131/208 (62.98%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.165e-45
Identity = 108/211 (51.18%), Postives = 133/211 (63.03%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            WYG DR  FL        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G I PE  +K G   G EAVWFK GA +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  D L+PGG FDPLGLA DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     H++DP AN
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVAN 251          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.521e-45
Identity = 103/208 (49.52%), Postives = 130/208 (62.50%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRTC-*HLSDPFAN 856
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D ++PGG FDPLGLA DPD FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP AN
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 255          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.521e-45
Identity = 101/209 (48.33%), Postives = 128/209 (61.24%), Query Frame = 2
Query:  248 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE  + +      E VWFK GA +     L+Y G    I   N+V  +  ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DPD FA LKVKEI+NGRLAMF+  GFF+Q +   KGP++    HL+DP  N
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTN 243          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.521e-45
Identity = 102/208 (49.04%), Postives = 131/208 (62.98%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPV-RTC*HLSDPFAN 856
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNN 254          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.594e-45
Identity = 101/208 (48.56%), Postives = 131/208 (62.98%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLGLA+DP+ FA LKVK I+NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.388e-45
Identity = 102/208 (49.04%), Postives = 131/208 (62.98%), Query Frame = 2
Query:  251 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAV-IAEIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRTC-*HLSDPFAN 856
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+  A++VL+G  E YR+  G   E  DK++PGG FDPLGLA DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     H++DP AN
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVAN 252          
The following BLAST results are available for this feature:
BLAST of EY659383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB21_MAIZE8.916e-4649.04Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA8.916e-4648.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA8.916e-4650.00Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB2A_SPIOL1.165e-4549.04Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI1.165e-4551.18Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA1.521e-4549.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO1.521e-4548.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB27_TOBAC1.521e-4549.04Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC2.594e-4548.56Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB26_PETSP3.388e-4549.04Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659383 ID=EY659383; Name=EY659383; organism=Citrus sinensis; type=EST; length=876bp
AAAGAAGCTCACCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGT
CCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTC
AATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTC
TACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTG
CCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAG
TGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAG
ATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTT
ACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAG
GCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTT
CATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAG
CTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAAC
TACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGA
GATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGG
ATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTA
GCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCCAGAA
TGGAAGACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTCCAGCTTATGT
CACAGGTGAAAGGTCCAGTGAGAACTTGCTAACATCTCAGTGATCCTTTT
GCCAACACTTGCTTACGTGATCTCGG
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