EY659383

Overview
NameEY659383
Unique NameEY659383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:122..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.420e-28
Identity = 77/185 (41.62%), Postives = 104/185 (56.22%), Query Frame = 2
Query:  311 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQV-KGPVRT-C*HLSDPFAN 856
            P +L G  PGD+G+DP GL+  P++F +++  E+ H RWAML   G ++PEA      N      W    A L DG    Y G  +P  NL   +  E + +  AE  R T   D E K +PGG FDPLG +KDP +F  LK+KEI+NGRLAM A +GF +Q  +    GP+     HL+DP+ N
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL--GNWVKAQEW----AALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHN 231          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.748e-25
Identity = 85/212 (40.09%), Postives = 112/212 (52.83%), Query Frame = 2
Query:  317 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFANTCLRDL 874
            YL G +PGD+G+DP GLS           K+ AY E+I+ R+AMLGAAG I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       D  +PGGP F+PLG  KD      LK+KEI+NGRLAM A+LG+F+Q +    GP +    HL+DP  N  L  L
Sbjct:   65 YLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.593e-24
Identity = 81/212 (38.21%), Postives = 111/212 (52.36%), Query Frame = 2
Query:  317 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNG-----------LDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFANTCLRDL 874
            YL G +PGDYG+DP GLS           ++ AY E+I+ R+AMLGA G I PE   K G      A+ WF+TG +   G T NY+  N  +      + E+ L+G AE+ R  +            L LE       +  +PGGPF +PLG  KD      LK+KE++NGRLAM A+LG+F+Q +    GP +    H++DP  N  L  L
Sbjct:   67 YLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTL-----FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.645e-23
Identity = 79/215 (36.74%), Postives = 102/215 (47.44%), Query Frame = 2
Query:  260 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPV-RTC*HLSDP 847
            PDR ++ P      S  P +L G +PGD+G+DP GL+  P+     Q  EL+H RWAMLGAAG  IPE   K G    P   W+  G      +T   F            I E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEI+NGRLAM A++G + Q +    GP+     HL+DP
Sbjct:   63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGEQEYFTDTTTLF------------IVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.761e-23
Identity = 78/215 (36.28%), Postives = 102/215 (47.44%), Query Frame = 2
Query:  260 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR----------------ITNGLDLEDKLHPGGP-FDPLGLAK-DPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPV-RTC*HLSDP 847
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+G AE  R                  N L   D  +PGG  FDPLG     P +   L+ KEI+NGRLAM A++G + Q +    GP+     HL+DP
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.121e-23
Identity = 81/253 (32.02%), Postives = 116/253 (45.85%), Query Frame = 2
Query:  245 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFANTCL 865
            AK    DR ++ P      ++ PEYL G + GDYG+DPFGL K  +                                              +++  ELIH RWAML   G I  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP + A L++ EI++ RLAM   LGF +Q  +  KGP+     HLSDP   T +
Sbjct:   45 AKTVISDRPLWFPG-----AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 281          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.061e-22
Identity = 76/214 (35.51%), Postives = 102/214 (47.66%), Query Frame = 2
Query:  311 PEYLTGEVPGDYGYDPFGLSK----------------------------------KPDDFSKY---------QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPV 820
            PE+L G + GD G+DPFGL K                                  KP  F  Y         +  ELIH RWAMLG  G I  EA             W   G + L++G++  Y G+ +P +L   +  E+++VG  E+ R  + LD E +++PGG FDPLGLA DP++   LK+ EI++ RLAM A L F LQ     KGPV
Sbjct:   66 PEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA--------WQDAGKVELVEGSS--YLGQPLPFSLTTLIWIEVLVVGYIEFQR-NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPV 268          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.363e-22
Identity = 74/231 (32.03%), Postives = 109/231 (47.19%), Query Frame = 2
Query:  311 PEYLTGEVPGDYGYDPFGLSKKPD-------------------------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFANTCL 865
            P++L G + GDYG+DPFGL K  +                                              +++  ELIH RWAML   G +  E              W   G + L+DG++  Y G+ +P ++   +  E++++G  E+ R    LD E +L+PGG F DPLGLA DP++ A L++ EI++ RLAM A LGF +Q  +  KGP+     HLSDP   T +
Sbjct:   65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAE-LDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.030e-22
Identity = 73/200 (36.50%), Postives = 103/200 (51.50%), Query Frame = 2
Query:  311 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFANTCLR 868
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A  P Q A  K KE+ NGRLAM A LGF +Q     KGP      HLSDP+ NT ++
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQ 248          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.532e-21
Identity = 69/202 (34.16%), Postives = 100/202 (49.50%), Query Frame = 2
Query:  311 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPV-RTC*HLSDPFANTCLRDL 874
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K KEI NGRLAM A LGF +Q     KGP      H+SDP+ NT ++ L
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249          
The following BLAST results are available for this feature:
BLAST of EY659383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB121_HORVU6.420e-2841.62Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB13_SOLLC1.748e-2540.09Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA9.593e-2438.21Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_SOLLC3.645e-2336.74Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY4.761e-2336.28Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4B_ARATH8.121e-2332.02Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH1.061e-2235.51Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH2.363e-2232.03Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB24_ARATH4.030e-2236.50Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.532e-2134.16Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659383 ID=EY659383; Name=EY659383; organism=Citrus sinensis; type=EST; length=876bp
AAAGAAGCTCACCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGT
CCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTC
AATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTC
TACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTG
CCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAG
TGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAG
ATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTT
ACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAG
GCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTT
CATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAG
CTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAAC
TACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGA
GATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGG
ATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTA
GCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCCAGAA
TGGAAGACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTCCAGCTTATGT
CACAGGTGAAAGGTCCAGTGAGAACTTGCTAACATCTCAGTGATCCTTTT
GCCAACACTTGCTTACGTGATCTCGG
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