EY659383

Overview
NameEY659383
Unique NameEY659383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:122..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.532e-21
Identity = 66/134 (49.25%), Postives = 82/134 (61.19%), Query Frame = 2
Query:  473 KFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRTC-*HLSDPFAN 856
            KFG     EAVWFK GA +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PG  FDPLGLA DP+  A LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP AN
Sbjct:    9 KFG-----EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 137          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 2.000e-21
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 2
Query:  311 PEYLTGEVPGDYGYDPFGLSKK------------------------------PDDFS---------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFAL-LKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRTC*HLSDPFAN 856
            PE+L G +PGD G+DP GLSK                               PD+ S               +++  ELIH RWAML   G ++ EA             W + G + LDG   +Y G ++P ++   +  E++LVGGAE+YR  +  + E + +PGG FDPL LA + ++ A  LK  EI++ RLAM +  G+ +Q +S  +G + +    +D   N
Sbjct:   60 PEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS--------WVEAGKVELDG--ASYAGLSLPFSITQLIWIEVILVGGAEFYR-NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKFADGLNN 276          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  599 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  599 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 50/89 (56.18%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  599 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  599 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     H++DP  N
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 2
Query:  599 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     H++DP  N
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.022e-18
Identity = 54/107 (50.47%), Postives = 68/107 (63.55%), Query Frame = 2
Query:  575 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFANTCLRDL 874
            +L+  +  +++L+G  E YR  N      G DL D+L+PGGPFDPLGLA DPD F  LKVKEI+NGRLAM  MLGF+ Q +   +GPV     HL DP A+  L  L
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTAL 115          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.937e-16
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2
Query:  599 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPVRT-C*HLSDPFAN 856
            +++L+G  E YR+     L   ED L+PGG FDPL    DP+ FA LKVKEI+NGRLAMF+M GFF+Q +   KGP+     HL+DP  N
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
BLAST of EY659383 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.813e-14
Identity = 57/187 (30.48%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  302 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPV-RTC*HLSDP 847
            +E P  LTGE P D G+DP  L+  PD +++ +  E+ H R AML   G I+PE   K          WF+ G   +DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D       +  E++NGRLA+ A+ G   Q ++  + P+     HL++P
Sbjct:  194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANP 350          

HSP 2 Score: 76.2554 bits (186), Expect = 2.618e-13
Identity = 59/175 (33.71%), Postives = 80/175 (45.71%), Query Frame = 2
Query:  311 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIQNGRLAMFAMLGFFLQLMSQVKGPV 820
            P YLTGE  GD G+DP GL+  P  F + Q  E+ H R +ML   G ++PE              WF+    + D    N           FAV+A + +V   EY+R     + N  +  D+ +PG  FDPL L  +       K  EI+NGRLAM  M G  +Q     K P+
Sbjct:  381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPI 525          
The following BLAST results are available for this feature:
BLAST of EY659383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB22_PINSY1.532e-2149.25Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB29_CHLRE2.000e-2131.14Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB2D_SOLLC3.193e-1956.18Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC3.193e-1956.18Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC3.193e-1956.18Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC5.447e-1955.06Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.447e-1955.06Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_EUGGR6.022e-1850.47Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_RAPSA1.937e-1651.11Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
LH18_EUGGR1.813e-1430.48Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659383 ID=EY659383; Name=EY659383; organism=Citrus sinensis; type=EST; length=876bp
AAAGAAGCTCACCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGT
CCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTC
AATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTC
TACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTG
CCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAG
TGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAG
ATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTT
ACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAG
GCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTT
CATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGGTCCTGAAG
CTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACACATTGAAC
TACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGTCATTGCTGA
GATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCAACGGTTTGG
ATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTA
GCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGAGATCCAGAA
TGGAAGACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTCCAGCTTATGT
CACAGGTGAAAGGTCCAGTGAGAACTTGCTAACATCTCAGTGATCCTTTT
GCCAACACTTGCTTACGTGATCTCGG
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