EY659377

Overview
NameEY659377
Unique NameEY659377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659377_ssr21 microsatellite EY659377_ssr21:21..35. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659377_ssr127 microsatellite EY659377_ssr127:127..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_MACFA (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.258e-40
Identity = 89/201 (44.28%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  238 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + R F+  +   T TL PGDGIGPEI+ +V ++F  A+ P+ WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH                             R           ++NIM+ +DGLFL+ C EVA+N
Sbjct:    4 VTRGFTGGVQ--TVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGGSKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAEN 202          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH2_KLULA (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Kluyveromyces lactis GN=IDH2 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.714e-40
Identity = 71/129 (55.04%), Postives = 94/129 (72.87%), Query Frame = 1
Query:  274 TATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTW---ESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEH 651
            T +   GDG+GPEI++SVK +F  A+VP++WE      ++ P   + LT     ++ S+ +N + LKGP+ATPIGKGHRSLNLTLRK   L+ANVRP  S+ GYKT Y++VNL+ IRENTEGEYSG+EH
Sbjct:   37 TVSFIEGDGVGPEISKSVKAIFSAAKVPIEWES----CDVSPIFVNGLTTIPDPAVASINKNLIALKGPLATPIGKGHRSLNLTLRKTFGLFANVRPAKSIEGYKTTYENVNLVLIRENTEGEYSGIEH 161          

HSP 2 Score: 39.2762 bits (90), Expect = 1.714e-40
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 3
Query:  666 GVVESLKIITRQASLRSAEYAVHYAKTMGREEYLAYTK---QYYAEN*WAFFEVVS*SCPEYPEITYEESVSTLLDD 887
            GVV+S+K+IT+ AS R   YA  YA+ + R + L   K   Q  A+    F +V      EYP+I   E  + LLD+
Sbjct:  166 GVVQSIKLITQDASERVIRYAFEYARAVDRSKVLVVHKSTIQRLADG--LFVDVAKKLSSEYPDI---ELQTELLDN 237          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_HUMAN (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Homo sapiens GN=IDH3A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.780e-40
Identity = 88/201 (43.78%), Postives = 117/201 (58.21%), Query Frame = 1
Query:  238 IARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + R F+  +   T TL PGDGIGPEI+ +V ++F  A+ P+ WEE  V     P  +  +  E+ ES+ +NK+GLKGP+ TPI  GH S+NL LRK  +LYANVRPC S+ GYKT Y DVN++TIRENTEGEYSG+EH                             R           ++NIM+ +DGLFL+ C EVA++
Sbjct:   23 VTRGFTGGVQ--TVTLIPGDGIGPEISAAVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPSEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIVDGVVQSIKLITEGASKRIAEFAFEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAES 221          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH2_SCHPO (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Schizosaccharomyces pombe GN=idh2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.285e-39
Identity = 85/187 (45.45%), Postives = 117/187 (62.57%), Query Frame = 1
Query:  274 TATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVA 834
            T T+  GDGIGPEIA+SV+++F+ A+VP++WE   V   +   T + +  ++ ESVR+NKV LKGP+ATPIGKGH S+NLTLR+   L+ANVRPC S+ GYKT YD+VN + IRENTEGEYSG+EH+                            R+  +    +  ++ IM+  DGLFL+   E+A
Sbjct:   47 TVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTT-IPDDAKESVRKNKVALKGPLATPIGKGHVSMNLTLRRTFGLFANVRPCVSITGYKTPYDNVNTVLIRENTEGEYSGIEHEVIPGVVQSIKLITRAASERVIRYAFQYARQTGKNNITVVHKATIMRMADGLFLECAKELA 232          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3A_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 2.008e-38
Identity = 90/198 (45.45%), Postives = 120/198 (60.61%), Query Frame = 1
Query:  244 RAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSF-LTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVA 834
            R  S D+  +T  L PGDGIGPEI+ SV+++F  A+ P+ W+   V T +  R   F +    +E +  NKVGLKGP+ TPIGKGHRSLNL +RKE +LYANVRPC SL G+KT YD+V+++TIRENTEGEYSG+EH+                            R+   +      ++NIM+++DGLFL  C E A
Sbjct:   18 RYSSGDVRRVT--LIPGDGIGPEISASVQKIFEAADAPIAWDPVDV-TPVKGRDGVFRIPSRCIELMHANKVGLKGPLETPIGKGHRSLNLAVRKEFSLYANVRPCRSLEGHKTLYDNVDVVTIRENTEGEYSGIEHEIVPGVVQSIKLITETASRNVASFAFEYARQNGRKVVTAVHKANIMRQSDGLFLSICREQA 212          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH1_AJECA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Ajellomyces capsulata GN=IDH1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.261e-32
Identity = 80/192 (41.67%), Postives = 118/192 (61.46%), Query Frame = 1
Query:  274 TATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYV-GTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK-GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ-XXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            T TL PGDGIG E+AESVK +F+   VP++WE+  V G +   +    L  ES+ S++RNK+GLKG + TP+ + GH+S N+ LR+EL++YA++    ++PGYKTR+D+V+L  IRENTEGEYSGLEHQ                          F +    ++ + +H ++NIM+  DGLF     +VA++
Sbjct:   53 TVTLIPGDGIGTEVAESVKTIFKADNVPIEWEQVDVSGLDAGNKHSEDLFKESIASLKRNKLGLKGILHTPVERSGHQSFNVALRQELDIYASIVLIKNIPGYKTRHDNVDLCIIRENTEGEYSGLEHQSVSGVVESLKIITRAKSERIAKFAFSFALANNRKKVTCIH-KANIMKLADGLFRSTFHKVAES 243          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH1_SCHPO (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe GN=idh1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.180e-30
Identity = 78/190 (41.05%), Postives = 116/190 (61.05%), Query Frame = 1
Query:  274 TATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYV-GTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG-HRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ-XXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVA 834
            T TL PGDGIG E + +V ++F+TA VP+++EE  V G E + ++      E+++S++RNKVGLKG + TP  KG H S N+ LRKEL++YA++    ++PG+KTR+D+V+   IRENTEGEYSGLEHQ                          F ++   +  + +H ++NIM+  DGLF +   +VA
Sbjct:   22 TVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELDIYASLVLIKNIPGFKTRHDNVDFAIIRENTEGEYSGLEHQSVPGVVESLKIITEYKSKRIAQFAFDFALQNGRKSVTCIH-KANIMKLADGLFRRTFYDVA 210          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30
Identity = 83/228 (36.40%), Postives = 124/228 (54.39%), Query Frame = 1
Query:  160 LLRRVLGSRSRQILSTTNPNPNLALPIA-RAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQN 840
            + RR +   +R + +  +P  +L+  I       D  P T TL PGDGIGP +  +V+QV      PV +E + V   +    +     E +ESV+RNKV LKG +ATP+G G  SLN+ LRKEL+++A++  C ++PG  TR+++V+++ IRENTEGEYSGLEH+                                 +K     ++NIM+  DGLFL+ C EVA++
Sbjct:    1 MARRSVSIFNRLLANPPSPFTSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFERYEVLGNMRKVPE-----EVIESVKRNKVCLKGGLATPVGGGVSSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKH 223          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH1_YEAST (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=IDH1 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30
Identity = 77/190 (40.53%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  274 TATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGK-GHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHT-QSNIMQKTDGLFLKWCPEVAQ 837
            T TL PGDG+G EI +SV+ +F    +P+DWE       I         +E++ES++RNK+GLKG   TP  + GH SLN+ LRK+L++YANV    SL G KTR  D++LI IRENTEGE+SGLEH+                         F   + +  KS+    ++NIM+  DGLF     E+ Q
Sbjct:   30 TVTLIPGDGVGKEITDSVRTIFEAENIPIDWET----INIKQTDHKEGVYEAVESLKRNKIGLKGLWHTPADQTGHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHE-SVPGVVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQ 214          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH1_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.484e-30
Identity = 76/193 (39.38%), Postives = 111/193 (57.51%), Query Frame = 1
Query:  259 DITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            D  P   TL PGDGIGP +  +V+QV      P+ +E++ V  E+     S +  E +ES+R+NKV LKG + TP+G G  SLN+ LRKEL+L+A++  C++LPG  TR+++V+++ IRENTEGEY+GLEH+                                 +K     ++NIM+  DGLFL+ C EVA+
Sbjct:   34 DGAPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIFFEKYDVHGEM-----SRVPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNVQLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAK 221          
The following BLAST results are available for this feature:
BLAST of EY659377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IDH3A_MACFA1.258e-4044.28Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH2_KLULA1.714e-4055.04Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3A_HUMAN4.780e-4043.78Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH2_SCHPO5.285e-3945.45Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3A_CAEEL2.008e-3845.45Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH1_AJECA1.261e-3241.67Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH1_SCHPO1.180e-3041.05Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH3_ARATH4.484e-3036.40Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH1_YEAST4.484e-3040.53Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH1_ARATH4.484e-3039.38Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659377 ID=EY659377; Name=EY659377; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGAAAAAAAAAAATAATAATAATAATAAAATTATATTCTCA
CCTTCAAAAGTTGCAATTTTTATTTTGCTTTTTTCTTTTTCTTTTTCATA
AAAATCACATCAAACGGAGAAGAAAAAAGAAGAAGAAGGATCAATCAATG
GCAACGCAGCTGCTGAGACGAGTCCTGGGAAGCCGATCGCGCCAGATCCT
CTCAACCACAAACCCCAACCCTAATTTAGCTTTGCCTATAGCCAGGGCCT
TCTCCTCCGATATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGA
ATCGGCCCCGAGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGA
AGTGCCAGTTGATTGGGAGGAGCATTATGTTGGGACTGAAATAGATCCTA
GAACACAAAGTTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAAC
AAGGTGGGCTTGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCG
TTCATTGAATCTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTA
GGCCTTGCTACAGCCTCCCTGGGTATAAAACTCGCTATGATGATGTGAAT
CTTATCACTATCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACA
TCAAGTGGNTGAGAAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCA
GGCTAGTTTGAGAAGTGCTGAATATGCNGTTCACTATGCGAAGACCATGG
GAAGAGAAGAGTATCTTGCATACACAAAGCAATATTATGCAGAAAACTGA
TGGGCTTTTTTTGAAGTGGTGTCCTGAAGTTGCCCAGAATACCCTGAGAT
AACATATGAAGAAAGTGTATCAACATTGCTGGATGATGCTTGGGAGAATC
CAACGGCTTCGATGGGTGGAATGGCTAACTCCATGGGAA
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