EY659377

Overview
NameEY659377
Unique NameEY659377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659377_ssr21 microsatellite EY659377_ssr21:21..35. BLAST: Citrus ESTs to Prunus persica proteins V1
EY659377_ssr127 microsatellite EY659377_ssr127:127..138. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3B_MACFA (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Macaca fascicularis GN=IDH3B PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.763e-26
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 1
Query:  280 TLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-KGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            T+ PGDG+GPE+  +VK+VF+ A VPV+++EH++ +E+          + L S++ NKV + G + TP+  KG   S ++ LR++L+L+ANV    SLPGY TR+++++L+ IRE TEGEYS LEH+                             +    K     ++NIM+  DGLFL+ C EVA+
Sbjct:   52 TMLPGDGVGPELMHAVKEVFKAAAVPVEFQEHHL-SEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRAKSQRIAKFAFDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAE 238          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3B_HUMAN (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens GN=IDH3B PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.008e-26
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 1
Query:  280 TLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-KGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            T+ PGDG+GPE+  +VK+VF+ A VPV+++EH++ +E+          + L S++ NKV + G + TP+  KG   S ++ LR++L+L+ANV    SLPGY TR+++++L+ IRE TEGEYS LEH+                             +    K     ++NIM+  DGLFL+ C EVA+
Sbjct:   52 TMLPGDGVGPELMHAVKEVFKAAAVPVEFQEHHL-SEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAE 238          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3B_PONAB (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Pongo abelii GN=IDH3B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.131e-26
Identity = 70/188 (37.23%), Postives = 108/188 (57.45%), Query Frame = 1
Query:  280 TLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIG-KGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            T+ PGDG+GPE+  +VK+VF+ A VPV+++EH++ +E+          + L S++ NKV + G + TP+  KG   S ++ LR++L+L+ANV    SLPGY TR+++++L+ IRE TEGE S LEH+                             +    K I   ++NIM+  DGLFL+ C EVA+
Sbjct:   52 TMLPGDGVGPELMHAVKEVFKAAAVPVEFQEHHL-SEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPMEYKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGECSSLEHESARGVIECLKIVTRAKSQRIAKFAFDYATKKGRSKVIAVHKANIMKLGDGLFLQCCEEVAE 238          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.310e-23
Identity = 65/189 (34.39%), Postives = 94/189 (49.74%), Query Frame = 1
Query:  280 TLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPR-TQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY--DDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            T+ PGDGIGPE  E+  +V   A+ P+ +E    G  +  R   S +  E++ES+R+ +V LKGP+ TP+G G +S N+TLRK    YANVRP    P   T Y    ++L+ +REN E  Y+G+EH                             R    +K    T+SNIM+  +G   +   +VAQ
Sbjct:   23 TVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQ 211          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_RICCN (Isocitrate dehydrogenase [NADP] OS=Rickettsia conorii GN=icd PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.970e-21
Identity = 59/135 (43.70%), Postives = 87/135 (64.44%), Query Frame = 1
Query:  256 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQ 654
            ++ TPIT     GDGIGPEI E+V  + R AE  +  E   VG ++  +   S ++ ES ES++R  + LK P+ TP G G++SLN+T+RK L L+AN+RP  SL P  +T + ++NL  IREN E  Y+G+E++
Sbjct:    2 AEFTPITIAY--GDGIGPEIMEAVLYILRKAEARIRLETIEVGEKLYKKHYTSGISEESWESIQRTGIILKAPITTPQGGGYKSLNVTIRKTLQLFANIRPAVSLHPFTRTLHPNLNLTIIRENEEDLYAGIEYR 134          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_RICBR (Isocitrate dehydrogenase [NADP] OS=Rickettsia bellii (strain RML369-C) GN=icd PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.490e-21
Identity = 69/196 (35.20%), Postives = 104/196 (53.06%), Query Frame = 1
Query:  256 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSF-LTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            ++ TPIT     GDGIGPEI E+V  + R AE  +  E   VG ++  +  S  ++ +S ES+ R  V LK P+ TP G G++SLN+T+RK L L+AN+RP  S  P  KT + ++NL  IREN E  Y+G+E++                             +   +K    ++ NIM+ +DG+F K   E+A+
Sbjct:    2 AEFTPITIAY--GDGIGPEIMEAVLYILRKAEARIRLETIEVGEKLYVKHYSSGISEQSWESIERTGVILKAPITTPQGGGYKSLNVTIRKTLQLFANIRPSVSFYPFTKTLHPNLNLTIIRENEEDLYAGIEYRQTHNMYESVKLISRTGCEKIIRYAFEYAVKNNRKKVTCLSKDNIMKFSDGIFHKVFNEIAK 195          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_RICFE (Isocitrate dehydrogenase [NADP] OS=Rickettsia felis GN=icd PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.221e-20
Identity = 68/196 (34.69%), Postives = 103/196 (52.55%), Query Frame = 1
Query:  256 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            ++ TPIT     GDGIGPEI E+V  + R AE  +  E   VG ++  +   S ++ ES ES++R  + LK P+ TP G G++SLN+T+RK L L+AN+RP  S  P   T +  +NL  IREN E  Y+G+E++                             +   +K    ++ NIM+ +DG+F K   E+A+
Sbjct:    2 AEFTPITIAY--GDGIGPEIMEAVLYILRKAEARIRLETIEVGEKLYKKHYTSGISEESWESIQRTGIILKAPITTPQGGGYKSLNVTIRKTLQLFANIRPSVSFHPFTMTLHPHLNLTIIRENEEDLYAGIEYRQTHNMYESIKLISHTGCEKIIRYAFEYAVKNNRKKVTCLSKDNIMKFSDGVFHKIFNEIAK 195          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_RICPR (Isocitrate dehydrogenase [NADP] OS=Rickettsia prowazekii GN=icd PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.088e-19
Identity = 66/193 (34.20%), Postives = 101/193 (52.33%), Query Frame = 1
Query:  265 TPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            TPIT     GDGIGPEI E+V  + R AE  +  E   VG ++  +   S ++ ES + ++R  + LK P+ TP   G++SLN+T+RK L L+AN+RP  S  P  +T + ++NL  IREN E  YSG+E++                             +   +K    T+ NIM+ +DG+F +   E+A+
Sbjct:    5 TPITIAY--GDGIGPEIMEAVLYILRKAEARISLETIEVGEKLYKKHYTSGISEESWDVIQRTGIILKAPITTPQSGGYKSLNVTIRKTLQLFANIRPVVSFYPFTRTLHPNLNLTIIRENEEDLYSGVEYRQTHNMYESMKLISHTGCKKIIRYAFEYAIKNNRKKVTCLTKDNIMKFSDGIFHRVFNEIAK 195          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_RICTY (Isocitrate dehydrogenase [NADP] OS=Rickettsia typhi GN=icd PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.075e-19
Identity = 64/196 (32.65%), Postives = 102/196 (52.04%), Query Frame = 1
Query:  256 SDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQ-SFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSL-PGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            ++ TPIT     GDGIGPEI ++V  + R AE  +  E   VG ++  +   S ++ ES   ++R  + LK P+ TP   G++SLN+T+RK L L+AN+RP  S  P  +T + ++NL  IREN E  YSG+E++                             +   +K    ++ NIM+ +DG+F +   E+A+
Sbjct:    2 AEFTPITIAY--GDGIGPEIMDAVLYILRQAEARISLETIEVGEKLYKKHYTSGISEESWNVIQRTGIILKAPITTPQSGGYKSLNVTIRKTLQLFANIRPAVSFHPFTRTLHPNLNLTIIRENEEDLYSGIEYRQTHNMYESLKLISHTGCKKIIRYAFEYAVKNNRKKVTCLSKDNIMKFSDGIFHRVFNEIAK 195          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_CALNO (Isocitrate dehydrogenase [NADP] OS=Caldococcus noboribetus GN=icd PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 54/130 (41.54%), Postives = 73/130 (56.15%), Query Frame = 1
Query:  286 FPGDGIGPEIAESVKQVFRTAEVP-------VDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            F GDGIGPEI ES K+V   A          + W E   G E      S L   +L++ +  +V LKGP+ TP+G G RSLN+TLR  L+LY+NVRP   Y  P      ++++ +  RENTE  Y+G+E
Sbjct:   38 FKGDGIGPEIVESAKKVLDAAVDKAYGGTRRIVWWEVTAGEEAQKECGSLLPDGTLQAFKLARVNLKGPLTTPVGGGFRSLNVTLRMVLDLYSNVRPVKWYGQPTPHCHPENIDWVIFRENTEDVYAGIE 167          
The following BLAST results are available for this feature:
BLAST of EY659377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IDH3B_MACFA1.763e-2637.23Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_HUMAN3.008e-2637.23Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_PONAB5.131e-2637.23Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH_THET85.310e-2334.39Isocitrate dehydrogenase [NADP] OS=Thermus thermop... [more]
IDH_RICCN4.970e-2143.70Isocitrate dehydrogenase [NADP] OS=Rickettsia cono... [more]
IDH_RICBR6.490e-2135.20Isocitrate dehydrogenase [NADP] OS=Rickettsia bell... [more]
IDH_RICFE3.221e-2034.69Isocitrate dehydrogenase [NADP] OS=Rickettsia feli... [more]
IDH_RICPR2.088e-1934.20Isocitrate dehydrogenase [NADP] OS=Rickettsia prow... [more]
IDH_RICTY6.075e-1932.65Isocitrate dehydrogenase [NADP] OS=Rickettsia typh... [more]
IDH_CALNO3.938e-1841.54Isocitrate dehydrogenase [NADP] OS=Caldococcus nob... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659377 ID=EY659377; Name=EY659377; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGAAAAAAAAAAATAATAATAATAATAAAATTATATTCTCA
CCTTCAAAAGTTGCAATTTTTATTTTGCTTTTTTCTTTTTCTTTTTCATA
AAAATCACATCAAACGGAGAAGAAAAAAGAAGAAGAAGGATCAATCAATG
GCAACGCAGCTGCTGAGACGAGTCCTGGGAAGCCGATCGCGCCAGATCCT
CTCAACCACAAACCCCAACCCTAATTTAGCTTTGCCTATAGCCAGGGCCT
TCTCCTCCGATATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGA
ATCGGCCCCGAGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGA
AGTGCCAGTTGATTGGGAGGAGCATTATGTTGGGACTGAAATAGATCCTA
GAACACAAAGTTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAAC
AAGGTGGGCTTGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCG
TTCATTGAATCTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTA
GGCCTTGCTACAGCCTCCCTGGGTATAAAACTCGCTATGATGATGTGAAT
CTTATCACTATCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACA
TCAAGTGGNTGAGAAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCA
GGCTAGTTTGAGAAGTGCTGAATATGCNGTTCACTATGCGAAGACCATGG
GAAGAGAAGAGTATCTTGCATACACAAAGCAATATTATGCAGAAAACTGA
TGGGCTTTTTTTGAAGTGGTGTCCTGAAGTTGCCCAGAATACCCTGAGAT
AACATATGAAGAAAGTGTATCAACATTGCTGGATGATGCTTGGGAGAATC
CAACGGCTTCGATGGGTGGAATGGCTAACTCCATGGGAA
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