EY659377

Overview
NameEY659377
Unique NameEY659377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_ARCFU (Isocitrate dehydrogenase [NADP] OS=Archaeoglobus fulgidus GN=icd PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.938e-18
Identity = 49/128 (38.28%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  286 FPGDGIGPEIAESVKQVFRTAEVPVD----WEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIRENTEGEYSGLE 648
            F GDGIG ++  +  +V   A   +     W + Y G +      ++L  ++L +++  +V LKGP+ TP+G G+RSLN+T+R+ L+LYANVRP Y L G  +     + VN +  RENTE  Y+G+E
Sbjct:   33 FEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVGGGYRSLNVTIRQVLDLYANVRPVYYLKGVPSPIKHPEKVNFVIFRENTEDVYAGIE 160          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH3B_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C37E2.1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.717e-18
Identity = 74/236 (31.36%), Postives = 117/236 (49.58%), Query Frame = 1
Query:  148 MATQLLRRVLGSRSRQILSTTNPNPNLALPIARAFSSDITPITATLFPGDGIGPEIAESVKQVFRTAEVPVDWEEHYVGTEIDPRTQSFLTWESLESV-RRNKVGLKGPM---ATPIGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRY-DDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEVAQ 837
            +A Q L  V  + SRQ  S T P P   L            +  T+ PGDG+GPE+  +V+ + +   +P+++EE ++ +E+   T+S     ++ES+ R N V LKG +   A    +G  + LN+ LR+ L+L+ANV    +L G KTR+   ++ + +RE TEGEYS LEH+                             +   +K     ++NIM+  DGLFL+ C  VA+
Sbjct:   12 VAPQTLGAVNAASSRQY-SITAPRPPTELN---------QKLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFL-SEVH-YTRSSSIENAVESIGRNNNVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVREQTEGEYSSLEHELVPGVIECLKISTRTKAERIAKFAFDYATKTGRKKVTAVHKANIMKLGDGLFLRTCEGVAK 235          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAES (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=icd PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.954e-17
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+LE+++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R +DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAYDETGEWLPQETLETIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIE 154          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAEQ (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=icd PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.954e-17
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+LE+++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R +DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAYDETGEWLPQETLETIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIE 154          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_BACSU (Isocitrate dehydrogenase [NADP] OS=Bacillus subtilis GN=icd PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.686e-17
Identity = 47/130 (36.15%), Postives = 75/130 (57.69%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLEH 651
            GDG GP+I  +  +V   A       E  + W+E Y G +   +T  +L  E+L+ +R   + +KGP+ TP+G G RSLN+ LR+EL+L+  +RP      +P    R +D +++  RENTE  Y+G+E+
Sbjct:   27 GDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVGGGIRSLNVALRQELDLFVCLRPVRYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEY 156          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: LEU3_SULTO (3-isopropylmalate dehydrogenase OS=Sulfolobus tokodaii GN=leuB PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 58/191 (30.37%), Postives = 92/191 (48.17%), Query Frame = 1
Query:  274 TATLFPGDGIGPEIAESVKQVFRTAE----VPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEH-QXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEV 831
            T  L  GDGIGPEI    K++         +P+++ E   G     R    L  +SL+ + +  + LKGP    +G+    + + LR+  ++YAN+RP  S+PG  T+Y +V+++ +RENTE  Y G EH                         + F +RR   +K     ++N+M+ TDGLF + C  V
Sbjct:    4 TVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGP----VGESAADVVVKLRQIYDMYANIRPAKSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVSDGVAVGMKIITRFASERIAKVGLNFALRR--RKKVTCVHKANVMRITDGLFAEACRSV 188          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STRSL (Isocitrate dehydrogenase [NADP] OS=Streptococcus salivarius GN=icd PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 49/129 (37.98%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVF-RTAEVP------VDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT---RYDDVNLITIRENTEGEYSGLE 648
            GDG+G +I ++ + +F +  EV       ++W+E   G +   +T  +L  E+LE++R + V +KGP+ TP+G G RSLN+ LR+EL+LYA VRP     G  +     +  N+   RENTE  Y+G+E
Sbjct:   25 GDGVGHDIWKNAQAIFDKAVEVAYEGKRHIEWQELLAGKKAYDKTGEWLPKETLEAIRESLVAIKGPLETPVGGGIRSLNVALRQELDLYACVRPVRYFDGVASPLKEPEKTNITIFRENTEDIYAGIE 153          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAAW (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MW2) GN=icd PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIE 154          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAAS (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MSSA476) GN=icd PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIE 154          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STAAR (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MRSA252) GN=icd PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.699e-17
Identity = 48/129 (37.21%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIGP+I ++  +V   A       E  ++W+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIE 154          
The following BLAST results are available for this feature:
BLAST of EY659377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IDH_ARCFU3.938e-1838.28Isocitrate dehydrogenase [NADP] OS=Archaeoglobus f... [more]
IDH3B_CAEEL6.717e-1831.36Probable isocitrate dehydrogenase [NAD] subunit be... [more]
IDH_STAES1.954e-1737.98Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAEQ1.954e-1737.98Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_BACSU5.686e-1736.15Isocitrate dehydrogenase [NADP] OS=Bacillus subtil... [more]
LEU3_SULTO9.699e-1730.373-isopropylmalate dehydrogenase OS=Sulfolobus toko... [more]
IDH_STRSL9.699e-1737.98Isocitrate dehydrogenase [NADP] OS=Streptococcus s... [more]
IDH_STAAW9.699e-1737.21Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAS9.699e-1737.21Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAR9.699e-1737.21Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659377 ID=EY659377; Name=EY659377; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGAAAAAAAAAAATAATAATAATAATAAAATTATATTCTCA
CCTTCAAAAGTTGCAATTTTTATTTTGCTTTTTTCTTTTTCTTTTTCATA
AAAATCACATCAAACGGAGAAGAAAAAAGAAGAAGAAGGATCAATCAATG
GCAACGCAGCTGCTGAGACGAGTCCTGGGAAGCCGATCGCGCCAGATCCT
CTCAACCACAAACCCCAACCCTAATTTAGCTTTGCCTATAGCCAGGGCCT
TCTCCTCCGATATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGA
ATCGGCCCCGAGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGA
AGTGCCAGTTGATTGGGAGGAGCATTATGTTGGGACTGAAATAGATCCTA
GAACACAAAGTTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAAC
AAGGTGGGCTTGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCG
TTCATTGAATCTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTA
GGCCTTGCTACAGCCTCCCTGGGTATAAAACTCGCTATGATGATGTGAAT
CTTATCACTATCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACA
TCAAGTGGNTGAGAAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCA
GGCTAGTTTGAGAAGTGCTGAATATGCNGTTCACTATGCGAAGACCATGG
GAAGAGAAGAGTATCTTGCATACACAAAGCAATATTATGCAGAAAACTGA
TGGGCTTTTTTTGAAGTGGTGTCCTGAAGTTGCCCAGAATACCCTGAGAT
AACATATGAAGAAAGTGTATCAACATTGCTGGATGATGCTTGGGAGAATC
CAACGGCTTCGATGGGTGGAATGGCTAACTCCATGGGAA
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