EY659377

Overview
NameEY659377
Unique NameEY659377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_STRMU (Isocitrate dehydrogenase [NADP] OS=Streptococcus mutans GN=icd PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 5.884e-14
Identity = 49/129 (37.98%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKT--RYDDVNLITI-RENTEGEYSGLE 648
            GDG+G +I ++ + VF  A          V W E   G +    T ++L  E+LE ++ + + +KGP+ TP+G G RSLN+ LR+EL+L+A VRP     G  +  ++ +   ITI RENTE  Y+G+E
Sbjct:   25 GDGVGQDIWKNAQIVFDKAIAKVYGGHKQVIWREVLAGKKAYNETGNWLPNETLEIIKTHLLAIKGPLETPVGGGIRSLNVALRQELDLFACVRPVRYFKGVPSPLKHPEKTAITIFRENTEDIYAGIE 153          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: LEU3_SULSO (3-isopropylmalate dehydrogenase OS=Sulfolobus solfataricus GN=leuB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.496e-13
Identity = 52/187 (27.81%), Postives = 85/187 (45.45%), Query Frame = 1
Query:  283 LFPGDGIGPEIAESVKQVFRTA----EVPVDWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQXXXXXXXXXXXXXXXXXXXXXXNMXFTMRRPWEEKSILHTQSNIMQKTDGLFLKWCPEV 831
            + PGDGIGPE+ E  K++         + +D  E   G     +    L   +L+ + +  + LKGP    +G+    + + LR+  ++YAN+RP  SLP  +++Y +V+L+ +RENTE  Y G E                        N+          K     ++N+M+ TDGLF   C E+
Sbjct:    7 VIPGDGIGPELYEGSKRIIAKLIEKYNLDIDLIEVEAGDVALNKYGEALPRHTLDVIEKADMILKGP----VGETAMDVVVKLRQMYDMYANIRPAKSLPNVQSKYPNVDLVIVRENTEDLYKGFEF-VTSTGVTIAIKVTTEFASKRIVNVALNYALMRRRKVTCVHKANVMRVTDGLFASVCREI 188          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH1_COLMA (Isocitrate dehydrogenase [NADP] 1 OS=Colwellia maris GN=icdI PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.496e-13
Identity = 43/133 (32.33%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPR--TQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCY---SLPGYKTRYDDVNLITIRENTEGEYSGLEHQ 654
            GDGIG ++   + +V   A       +  ++W E Y G +      ++++L  E+L  ++  KV +KGP+ TP+G G  SLN+ +R+ L+LY   RP      +P    R  +V+++  RENTE  Y+G+E++
Sbjct:   34 GDGIGVDVTPPMLKVVNAAVAKAYGGDRKIEWLEVYAGEKATKMYDSETWLPEETLNILQEYKVSIKGPLTTPVGGGMSSLNVAIRQMLDLYVCQRPVQWFTGVPSPVKRPSEVDMVIFRENTEDIYAGIEYK 166          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_ANASP (Isocitrate dehydrogenase [NADP] OS=Anabaena sp. (strain PCC 7120) GN=icd PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.472e-12
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTAEVP-------VDWEEHYVGTEIDPR--TQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLE 648
            GDG G +I  + ++V   A          + W + Y G E      T  +L  ++L ++R   V +KGP+ TP+G G RSLN+ LR+  +LYA VRPC    G  + +   + +++I  RENTE  Y G+E
Sbjct:   34 GDGTGIDIWPATEKVLDAAVAKAYQGKRKISWFKVYAGDEACDLYGTYQYLPEDTLTAIREYGVAIKGPLTTPVGGGIRSLNVALRQIFDLYACVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYLGIE 164          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_ECOLI (Isocitrate dehydrogenase [NADP] OS=Escherichia coli (strain K12) GN=icd PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.217e-12
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPRTQSF-----LTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLE 648
            GDGIG ++  ++ +V   A       E  + W E Y G   +  TQ +     L  E+L+ +R  +V +KGP+ TP+G G RSLN+ LR+EL+LY  +RP       P      +  +++  REN+E  Y+G+E
Sbjct:   34 GDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTG---EKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIE 164          
BLAST of EY659377 vs. ExPASy Swiss-Prot
Match: IDH_SYNY3 (Isocitrate dehydrogenase [NADP] OS=Synechocystis sp. (strain PCC 6803) GN=icd PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 7.193e-12
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query:  292 GDGIGPEIAESVKQVFRTA-------EVPVDWEEHYVGTEIDPR--TQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLE 648
            GDG G +I  + + V   A          ++W + Y G E      T      ++L +++   V +KGP+ TP+G G RSLN+ LR+  +LY  VRPC   PG  + +   + +++I  RENTE  Y G+E
Sbjct:   34 GDGTGVDIWPATELVINAAIAKAYGGREEINWFKVYAGDEACELYGTYQIFPEDTLTAIKEYGVAIKGPLTTPVGGGIRSLNVALRQIFDLYTCVRPCRYYPGTPSPHKTPEKLDIIVYRENTEDIYLGIE 164          
The following BLAST results are available for this feature:
BLAST of EY659377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IDH_STRMU5.884e-1437.98Isocitrate dehydrogenase [NADP] OS=Streptococcus m... [more]
LEU3_SULSO8.496e-1327.813-isopropylmalate dehydrogenase OS=Sulfolobus solf... [more]
IDH1_COLMA8.496e-1332.33Isocitrate dehydrogenase [NADP] 1 OS=Colwellia mar... [more]
IDH_ANASP2.472e-1235.11Isocitrate dehydrogenase [NADP] OS=Anabaena sp. (s... [more]
IDH_ECOLI4.217e-1234.33Isocitrate dehydrogenase [NADP] OS=Escherichia col... [more]
IDH_SYNY37.193e-1233.59Isocitrate dehydrogenase [NADP] OS=Synechocystis s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-E03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659377 ID=EY659377; Name=EY659377; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGAAAAAAAAAAATAATAATAATAATAAAATTATATTCTCA
CCTTCAAAAGTTGCAATTTTTATTTTGCTTTTTTCTTTTTCTTTTTCATA
AAAATCACATCAAACGGAGAAGAAAAAAGAAGAAGAAGGATCAATCAATG
GCAACGCAGCTGCTGAGACGAGTCCTGGGAAGCCGATCGCGCCAGATCCT
CTCAACCACAAACCCCAACCCTAATTTAGCTTTGCCTATAGCCAGGGCCT
TCTCCTCCGATATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGA
ATCGGCCCCGAGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGA
AGTGCCAGTTGATTGGGAGGAGCATTATGTTGGGACTGAAATAGATCCTA
GAACACAAAGTTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAAC
AAGGTGGGCTTGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCG
TTCATTGAATCTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTA
GGCCTTGCTACAGCCTCCCTGGGTATAAAACTCGCTATGATGATGTGAAT
CTTATCACTATCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACA
TCAAGTGGNTGAGAAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCA
GGCTAGTTTGAGAAGTGCTGAATATGCNGTTCACTATGCGAAGACCATGG
GAAGAGAAGAGTATCTTGCATACACAAAGCAATATTATGCAGAAAACTGA
TGGGCTTTTTTTGAAGTGGTGTCCTGAAGTTGCCCAGAATACCCTGAGAT
AACATATGAAGAAAGTGTATCAACATTGCTGGATGATGCTTGGGAGAATC
CAACGGCTTCGATGGGTGGAATGGCTAACTCCATGGGAA
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