EY659370

Overview
NameEY659370
Unique NameEY659370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:109..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 7.874e-34
Identity = 87/195 (44.62%), Postives = 115/195 (58.97%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 7.874e-34
Identity = 86/195 (44.10%), Postives = 113/195 (57.95%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D ++PGG FDPLG + DPD     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 85/195 (43.59%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 84/195 (43.08%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+  G   ++ D L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 81/195 (41.54%), Postives = 113/195 (57.95%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +   +++     +++L+G  E YR+  G   ++ D L+PGG FDPLG ++DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 83/195 (42.56%), Postives = 113/195 (57.95%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G   ++ D L+PGG FDPLG ++DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.028e-33
Identity = 87/195 (44.62%), Postives = 113/195 (57.95%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YRI  G   ++ D L+PGG FDPLG + DP+     K +    GRLAM  M G  ++ +   KG L
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPL 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.343e-33
Identity = 84/195 (43.08%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.992e-33
Identity = 83/195 (42.56%), Postives = 113/195 (57.95%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RRS-DGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVW K G+ +     L+Y G    +    + A+ A +++L+G  E YR+  G    + D L+PGG FDPLG ++DP+     K + + +GRLAMF M G  ++ +   KG L
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPL 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.992e-33
Identity = 86/196 (43.88%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQLR 833
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G   PE   K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  D L+PGG FDPLG + DPD     K +   +GRLAMF M G  ++ +   KG ++
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240          
The following BLAST results are available for this feature:
BLAST of EY659370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_ORYSJ7.874e-3444.62Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_GOSHI7.874e-3444.10Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2G_SOLLC1.028e-3343.59Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC1.028e-3343.08Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_APIGR1.028e-3341.54Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_TOBAC1.028e-3342.56Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_MAIZE1.028e-3344.62Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_SPIOL1.343e-3343.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_PETSP2.992e-3342.56Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB215_PEA2.992e-3343.88Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659370 ID=EY659370; Name=EY659370; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGAAAGAAGCATGCAGCAGCAACACTCTGAAGATGGCTTCA
TTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCT
TGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTG
CATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAA
GCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGA
AGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGG
GTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCC
GGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTT
CAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTG
GTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAAC
TGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGG
AAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTG
CTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATC
ACCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGA
CCCACTGGGATTTAGCAAGGATCCTGACCATTTGCATTGCTAAAAGTGAA
GGAGATCAGATGGAAGACTTGCCATGTTTTGCATGCTTGGNNTTCTTCTC
AAGCTTATGTCACAGGTGAAAGGTCAGTTGAGAACTTGCTAACATCTCNT
GATCCTTTTGCCAAACTTGCTACCGGAT
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