EY659370

Overview
NameEY659370
Unique NameEY659370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:109..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.939e-32
Identity = 82/195 (42.05%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    I    + A+ A +++L+G  E YRI  G   ++ D ++PGG FDPL  + DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   29 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 219          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.308e-32
Identity = 83/195 (42.56%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YR+  G   E  DK++PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 211          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.321e-32
Identity = 85/198 (42.93%), Postives = 114/198 (57.58%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+  G   E  DK++PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.321e-32
Identity = 84/195 (43.08%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDLE--DKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G    I    + AV A ++VL+G  E YR+  G   E  DK++PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.321e-32
Identity = 82/195 (42.05%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+      ++ D L+PGG FDPLG ++DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32
Identity = 82/196 (41.84%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  NG   + ED L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32
Identity = 83/195 (42.56%), Postives = 111/195 (56.92%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G    +   +L+     ++VL+G  E YRI  G   ++ D L+PGG FDPLG ++ P      K +   +GRLAMF M G  ++ +   KG L
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32
Identity = 82/196 (41.84%), Postives = 113/196 (57.65%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRIT-NGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+  NG   + ED L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG +
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 82/196 (41.84%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            WYG DR  +L        E P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YR+     L   ED L+PGG FDPLG + DP+     K +   +GRLAMF M G  ++ +   KG L
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240          
BLAST of EY659370 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 81/195 (41.54%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGFSKDPDHLHC*K*RR-SDGRLAMFCMLGXLLKLMSQVKGQL 830
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI  G   ++ D L+PGG FDPLG ++ P+     K +   +GRLAMF M G  +  +   KG L
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPL 202          
The following BLAST results are available for this feature:
BLAST of EY659370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB21_SOYBN1.939e-3242.05Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB25_SOLLC3.308e-3242.56Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC4.321e-3242.93Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC4.321e-3243.08Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_NICPL4.321e-3242.05Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_ARATH5.643e-3241.84Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT5.643e-3242.56Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ARATH5.643e-3241.84Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_SINAL1.257e-3141.84Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PEA1.257e-3141.54Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659370 ID=EY659370; Name=EY659370; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGAAAGAAGCATGCAGCAGCAACACTCTGAAGATGGCTTCA
TTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCT
TGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTG
CATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAA
GCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGA
AGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGG
GTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCC
GGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTT
CAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTG
GTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAAC
TGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGG
AAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTG
CTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATC
ACCAACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGA
CCCACTGGGATTTAGCAAGGATCCTGACCATTTGCATTGCTAAAAGTGAA
GGAGATCAGATGGAAGACTTGCCATGTTTTGCATGCTTGGNNTTCTTCTC
AAGCTTATGTCACAGGTGAAAGGTCAGTTGAGAACTTGCTAACATCTCNT
GATCCTTTTGCCAAACTTGCTACCGGAT
back to top