EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_SODGM (Glycine dehydrogenase [decarboxylating] OS=Sodalis glossinidius (strain morsitans) GN=gcvP PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 8.198e-79
Identity = 132/234 (56.41%), Postives = 172/234 (73.50%), Query Frame = 2
Query:   68 ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAXGRLTA 769
            +  IP  L R +P LT  VFN+YH+E E++RY+H L+ K+L+L  +MIPLGSCTMKLNA  EM+P+TWP FA +HPF P +QA GYQ+M   L  WL  +TG+D+  +QPN+GA GEYAGL+ IR YH++R    R++C+IP SAHGTNPA+A M GM +  V  D  GNI++ +LR  AE   + LS +MVTYPSTHGVYEE I E+C+I+H  GGQVY+DGANMNA   +T+
Sbjct:  457 DEVIPPELLRATPILTHEVFNRYHSETEMMRYMHRLERKDLALNQAMIPLGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAAGYQQMIAQLSRWLIQLTGYDALCMQPNSGAQGEYAGLLAIRRYHESRNQGERHICLIPSSAHGTNPASAQMAGMSVTVVACDKNGNIDLHDLRAKAEQAGEQLSCIMVTYPSTHGVYEETIREVCQIVHQYGGQVYLDGANMNAQVGITS 690          

HSP 2 Score: 24.2534 bits (51), Expect = 8.198e-79
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 1
Query:  766 SPGYIGADVCISSPQHLHSH 825
            SPGYIGADV      HL+ H
Sbjct:  690 SPGYIGADV-----SHLNLH 704          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_DINSH (Glycine dehydrogenase [decarboxylating] OS=Dinoroseobacter shibae (strain DFL 12) GN=gcvP PE=3 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.332e-78
Identity = 133/231 (57.58%), Postives = 175/231 (75.76%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAXGRLTA 769
            +P  + RES Y+T P+F+    E E+ RY+  L  ++L+L  +MIPLGSCTMKLNAT EM+P+TWP FAN+HPFAPADQA GY EM   L + LC +TG+D+ S+QPN+GA GEYAGL+ IR YH+ARG+ HRN+C+IP SAHGTNPA+A M G K+V V +   G+I++E+ R  AE + +NL+  M+TYPSTHGV+EE + E+C I H +GGQVY+DGANMNA   L+A
Sbjct:  455 LPQEMLRESSYMTHPIFHMNRAEAEMTRYMRRLADRDLALDRAMIPLGSCTMKLNATVEMLPLTWPEFANLHPFAPADQAAGYHEMIAELSQMLCDVTGYDAMSMQPNSGAQGEYAGLLAIRGYHRARGEGHRNICLIPTSAHGTNPASAQMVGWKVVVVKSAENGDIDLEDFRAKAEQHSENLAGCMITYPSTHGVFEEIVREVCDITHAHGGQVYIDGANMNAMVGLSA 685          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_RHIEC (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gcvP PE=3 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.739e-78
Identity = 137/238 (57.56%), Postives = 177/238 (74.37%), Query Frame = 2
Query:   38 FTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            FT A    E    +P  L R S YL+ P+F+    E E+ RYI  L  ++L+L  +MIPLGSCTMKLNAT EM+P+TWP F++IHPF PADQA GY+EM ++L E LC +TG+D+FS+QPN+GA GEYAGL+ IR YH A G+ HR+VC+IP SAHGTNPA+A M GMK+V V     G+I++E+ R  AE +  NLS  M+TYPSTHGV+EE + EIC+++H +GGQVY+DGANMNA
Sbjct:  448 FTIADF--EPSYRLPKALLRTSEYLSHPIFHMNRAESEMTRYIRRLSDRDLALDRAMIPLGSCTMKLNATAEMLPITWPEFSDIHPFVPADQALGYREMLDDLTEKLCAVTGYDAFSMQPNSGAQGEYAGLLTIRNYHIANGEGHRDVCLIPTSAHGTNPASAQMVGMKVVVVKVRENGDIDMEDFRAKAEEHAANLSCCMITYPSTHGVFEETVKEICELVHKHGGQVYLDGANMNA 683          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_PHOLL (Glycine dehydrogenase [decarboxylating] OS=Photorhabdus luminescens subsp. laumondii GN=gcvP PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.272e-78
Identity = 130/232 (56.03%), Postives = 177/232 (76.29%), Query Frame = 2
Query:   74 AIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAXGRLTA 769
            +IP+ + R    L  P FN+YH+E +++RY+H L+ ++L+L  +MIPLGSCTMKLNA  EM+P++WP F  +HPF P +QAQGYQ+M + L  WL  +TG+D   +QPN+GA GEYAGL+ IR YH++RG+ HR++C+IP SAHGTNPA+A M GM +V V  D +GNI++ +LR+ AE + + LS +MVTYPSTHGVYEE I ++C+IIH  GGQVY+DGANMNA   +TA
Sbjct:  462 SIPASMLRSDEILLHPNFNRYHSETDMMRYMHRLERRDLALNQAMIPLGSCTMKLNAAAEMLPISWPEFNELHPFCPPEQAQGYQQMISQLSHWLVQLTGYDVVCMQPNSGAQGEYAGLLAIRRYHESRGEGHRHICLIPSSAHGTNPASAHMAGMTVVVVSCDKEGNIDLVDLREKAEESGNELSCIMVTYPSTHGVYEETIRQVCEIIHQYGGQVYLDGANMNAQVGITA 693          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_VARPS (Glycine dehydrogenase [decarboxylating] OS=Variovorax paradoxus (strain S110) GN=gcvP PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.967e-78
Identity = 129/225 (57.33%), Postives = 175/225 (77.78%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +P  L R S +LT PVFN + +E  +LRYI  L  K+L+L  SMIPLGSCTMKLNAT+EM+P+TWP FANIHPFAPA+Q  GY ++   L  WLC  TG+   SLQPNAG+ GEYAGL+ IR++H+A G  HRN+C+IP SAHGTNPA+A M G+++V    DA+GN+++++LR+A E + D L+ +M+TYPSTHGV+E  + E+C+++H++GG+VY+DGANMNA
Sbjct:  468 LPEDLRRTSAFLTHPVFNTHKSETAMLRYIRSLSDKDLALDRSMIPLGSCTMKLNATSEMIPITWPEFANIHPFAPAEQLVGYAQLDAQLRAWLCEATGYAGISLQPNAGSQGEYAGLLAIRSFHEANGQGHRNICLIPSSAHGTNPASAQMVGLQVVVTACDAQGNVDMDDLRRACEKHSDKLAAVMITYPSTHGVFETRVKELCELVHEHGGRVYVDGANMNA 692          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_RHIE6 (Glycine dehydrogenase [decarboxylating] OS=Rhizobium etli (strain CIAT 652) GN=gcvP PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.967e-78
Identity = 136/238 (57.14%), Postives = 177/238 (74.37%), Query Frame = 2
Query:   38 FTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            FT A    E    +P GL R + YL  P+F+    E E+ RYI  L  ++L+L  SMIPLGSCTMKLNAT EM+P+TWP F++IHPF PADQA GY+EM ++L E LC +TG+D+FS+QPN+GA GEYAGL+ IR YH A G+ HR+VC+IP SAHGTNPA+A M GMK+V V     G+I++++ R  AE +  +LS  M+TYPSTHGV+EE + EIC+++H +GGQVY+DGANMNA
Sbjct:  448 FTIADF--EPSYLLPKGLLRTTDYLAHPIFHMNRAESEMTRYIRRLSDRDLALDRSMIPLGSCTMKLNATAEMLPITWPEFSDIHPFVPADQALGYREMLDDLTEKLCAVTGYDAFSMQPNSGAQGEYAGLLTIRNYHIANGEGHRDVCLIPTSAHGTNPASAQMVGMKVVVVKVRENGDIDLDDFRTKAEEHAASLSCCMITYPSTHGVFEETVKEICELVHKHGGQVYLDGANMNA 683          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_AGRT5 (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gcvP PE=3 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.967e-78
Identity = 135/230 (58.70%), Postives = 174/230 (75.65%), Query Frame = 2
Query:   62 EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E +  +P  L R S Y+T P+F+    E E+ RYI  L  ++L+L  SMIPLGSCTMKLNAT EM+P+TWP F++IHPF PA+QA GY+EM ++L E LC++TG+D+FS+QPN+GA GEYAGL+ IR YH A G  HR+VC+IP SAHGTNPA+A M GMK+V V     G+I+I++ R  AE   +NLS  M+TYPSTHGV+EE + EIC+I H +GGQVY+DGANMNA
Sbjct:  454 EPDYRLPKDLLRTSQYMTHPIFHMNRAESEMTRYIRRLSDRDLALDRSMIPLGSCTMKLNATAEMLPITWPEFSDIHPFVPANQALGYKEMIDDLSEKLCSVTGYDAFSMQPNSGAQGEYAGLLTIRNYHLANGGTHRDVCLIPTSAHGTNPASAQMVGMKVVPVKVRDNGDIDIDDFRLKAEQYAENLSCCMITYPSTHGVFEETVREICEITHKHGGQVYLDGANMNA 683          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_AGRVS (Glycine dehydrogenase [decarboxylating] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=gcvP PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.875e-78
Identity = 134/225 (59.56%), Postives = 171/225 (76.00%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +P+ L R S YLT P+F+    E E+ RYI  L  ++L+L  +MIPLGSCTMKLNAT EM+P+TWP F++IHPFAPADQA GYQEM ++L E LC +TG+D+ S+QPN+GA GEYAGL+ IR YH A+GD HR VC+IP SAHGTNPA+A M GM +V V     G++++ + R  AE +  NLS  M+TYPSTHGV+EE + EIC+I H +GGQVY+DGANMNA
Sbjct:  459 LPTSLLRTSQYLTHPIFHMNRAESEMTRYIRRLSDRDLALDRAMIPLGSCTMKLNATAEMLPITWPEFSDIHPFAPADQALGYQEMIDDLSEKLCAVTGYDAISMQPNSGAQGEYAGLLTIRNYHLAKGDTHRTVCLIPTSAHGTNPASAQMAGMLVVPVKALDNGDVDLADFRTKAEQHSTNLSCCMITYPSTHGVFEETVREICEITHAHGGQVYLDGANMNA 683          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_PELUB (Glycine dehydrogenase [decarboxylating] OS=Pelagibacter ubique GN=gcvP PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 8.632e-78
Identity = 135/225 (60.00%), Postives = 172/225 (76.44%), Query Frame = 2
Query:   77 IPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            IP  L R S YL  PVFN YH+E E+LRY+  L+  +++L  SMI LGSCTMKLNA  EM+PVTW  F+  HPF+P +Q  GY+E+F +L  WL +ITGF   SLQPNAGA GE+AGLMVIR +H+  G+ +RNVC+IP SAHGTNPA+A M GMK+V V  D  GN++ E+L+  AE + +NL+ LMVTYPSTHGV+EE I +IC++IH++GGQVYMDGAN+NA
Sbjct:  451 IPKNLLRTSTYLDHPVFNSYHSETEMLRYLKKLEDSDIALNKSMIALGSCTMKLNAVAEMIPVTWKEFSQPHPFSPVEQMDGYRELFTDLKNWLRSITGFSGVSLQPNAGAQGEFAGLMVIRKFHEKNGETNRNVCLIPSSAHGTNPASAQMVGMKVVVVKCDQYGNVDYEDLKNKAEEHSENLAALMVTYPSTHGVFEEKITDICELIHNHGGQVYMDGANLNA 675          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_CHICK (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Gallus gallus GN=GLDC PE=1 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 1.472e-77
Identity = 131/247 (53.04%), Postives = 180/247 (72.87%), Query Frame = 2
Query:   11 LFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +F    S    A  + EE +  + +   R S +LT  VFN YH+E  ++RY+  L++K++SL HSMIPLGSCTMKLN++ E+ P++W  FANIHPF P DQAQGYQ++F +L + LC ITG+D  S QPN+GA GEYAGL  I+AY  A+G+ HR+VC+IP SAHGTNPA+A M GMKI  +  D  G+I+I  L+   + +++NL+ +M+TYPST+GV+EE I ++C +IH +GGQVY+DGANMNA
Sbjct:  471 IFGCESSAELVAEGMGEETKGILSTPFKRTSKFLTHQVFNSYHSETNIVRYMKRLENKDISLVHSMIPLGSCTMKLNSSAELAPISWKEFANIHPFVPLDQAQGYQQLFKDLEKDLCEITGYDKISFQPNSGAQGEYAGLAAIKAYLNAKGERHRSVCLIPRSAHGTNPASAQMAGMKIQPIEVDKNGSIDISHLKAMVDKHKENLAAIMITYPSTNGVFEEEIGDVCDLIHKHGGQVYLDGANMNA 717          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_SODGM8.198e-7956.41Glycine dehydrogenase [decarboxylating] OS=Sodalis... [more]
GCSP_DINSH1.332e-7857.58Glycine dehydrogenase [decarboxylating] OS=Dinoros... [more]
GCSP_RHIEC1.739e-7857.56Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_PHOLL2.272e-7856.03Glycine dehydrogenase [decarboxylating] OS=Photorh... [more]
GCSP_VARPS2.967e-7857.33Glycine dehydrogenase [decarboxylating] OS=Variovo... [more]
GCSP_RHIE62.967e-7857.14Glycine dehydrogenase [decarboxylating] OS=Rhizobi... [more]
GCSP_AGRT52.967e-7858.70Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]
GCSP_AGRVS3.875e-7859.56Glycine dehydrogenase [decarboxylating] OS=Agrobac... [more]
GCSP_PELUB8.632e-7860.00Glycine dehydrogenase [decarboxylating] OS=Pelagib... [more]
GCSP_CHICK1.472e-7753.04Glycine dehydrogenase [decarboxylating], mitochond... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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