EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCGI (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium gilvum (strain PYR-GCK) GN=gcvP PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.277e-70
Identity = 125/224 (55.80%), Postives = 157/224 (70.09%), Query Frame = 2 
Query:   80 PSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            P+  TR S +LT P F+ Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TW  F   HPFAPA    G + +  +L  WL  ITG+D  SLQPNAG+ GEYAGL+ I+AYH ARGD  R VC+IP SAHGTN A+AAM GMK+V V   A G++++++LR     + D LS LM+TYPSTHGVYE  I +IC  +HD GGQVY+DGAN+NA
Sbjct:  459 PAVATRTSEFLTHPAFSDYRTETSMMRYLRSLADKDIALDRSMIPLGSCTMKLNAAAEMEAITWAEFGRQHPFAPASDTPGLRRLIADLQSWLTGITGYDEISLQPNAGSQGEYAGLLAIQAYHHARGDSGRTVCLIPSSAHGTNAASAAMVGMKVVVVACRANGDVDLDDLRAKVTEHADRLSALMITYPSTHGVYEHDIADICAAVHDAGGQVYVDGANLNA 682
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_ROSDO (Glycine dehydrogenase [decarboxylating] OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.072e-70
Identity = 120/224 (53.57%), Postives = 163/224 (72.77%), Query Frame = 2 
Query:   80 PSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            P  + R S YLT P+F+    E E++RY+  L  ++L+L  +MIPLGSCTMKLN+  EMMPV+W  F+ +HPFAP DQA+GY EM ++L   LC ITG+D  S+QPN+GA GEYAGL+ I  YH+A G+ HRN+C+IP+SAHGTNPA+A M G  +V + +   G+I++ +    AE +  NL+  M+TYPSTHGV+EE + E+ +I H +GGQVY+DGANMNA
Sbjct:  455 PEEMLRTSDYLTHPIFHMNRAETEMMRYMRRLSDRDLALDRAMIPLGSCTMKLNSAAEMMPVSWRDFSLLHPFAPVDQAKGYTEMIDDLSAKLCQITGYDQISMQPNSGAQGEYAGLLSIAGYHRANGEAHRNICLIPMSAHGTNPASAQMVGWTVVPIKSADNGDIDMADFAAKAEQHAANLAGCMITYPSTHGVFEETVTEVTRITHQHGGQVYIDGANMNA 678
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCLE (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium leprae GN=gcvP PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.652e-70
Identity = 122/224 (54.46%), Postives = 157/224 (70.09%), Query Frame = 2 
Query:   80 PSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            P   TR S +LT P F KY TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TW  F   HPFAP     G + + ++L  WL  ITG+D+ SLQPNAG+ GEYAGL+ I  YH +RG+ HRNVC+IP SAHGTN A+AA+ GM++V VG    G++++++LR     + + LS LM+TYPSTHGVYE  I EIC  +HD GGQVY+DGAN+NA
Sbjct:  459 PDIATRTSAFLTHPTFTKYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWQEFTRQHPFAPVSDTPGLRRLISDLESWLVQITGYDAVSLQPNAGSQGEYAGLLAIHDYHVSRGEPHRNVCLIPSSAHGTNAASAALVGMRVVVVGCHDNGDVDLDDLRIKLSEHANRLSVLMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNA 682
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCLB (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium leprae (strain Br4923) GN=gcvP PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 8.652e-70
Identity = 122/224 (54.46%), Postives = 157/224 (70.09%), Query Frame = 2 
Query:   80 PSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            P   TR S +LT P F KY TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TW  F   HPFAP     G + + ++L  WL  ITG+D+ SLQPNAG+ GEYAGL+ I  YH +RG+ HRNVC+IP SAHGTN A+AA+ GM++V VG    G++++++LR     + + LS LM+TYPSTHGVYE  I EIC  +HD GGQVY+DGAN+NA
Sbjct:  459 PDIATRTSAFLTHPTFTKYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWQEFTRQHPFAPVSDTPGLRRLISDLESWLVQITGYDAVSLQPNAGSQGEYAGLLAIHDYHVSRGEPHRNVCLIPSSAHGTNAASAALVGMRVVVVGCHDNGDVDLDDLRIKLSEHANRLSVLMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNA 682
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCTU (Probable glycine dehydrogenase [decarboxylating] OS=Mycobacterium tuberculosis GN=gcvP PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.517e-69
Identity = 119/220 (54.09%), Postives = 157/220 (71.36%), Query Frame = 2 
Query:   92 TRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            TR S +LT P F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TWP F   HPFAPA    G +++  +L  WL  ITG+D+ SLQPNAG+ GEYAGL+ I  YH +RG+ HR++C+IP SAHGTN A+AA+ GM++V V     G++++++LR     + + LS LM+TYPSTHGVYE  I EIC  +HD GGQVY+DGAN+NA
Sbjct:  452 TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEFGRQHPFAPASDTAGLRQLVADLQSWLVLITGYDAVSLQPNAGSQGEYAGLLAIHEYHASRGEPHRDICLIPSSAHGTNAASAALAGMRVVVVDCHDNGDVDLDDLRAKVGEHAERLSALMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNA 671
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCTA (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gcvP PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.517e-69
Identity = 119/220 (54.09%), Postives = 157/220 (71.36%), Query Frame = 2 
Query:   92 TRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            TR S +LT P F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TWP F   HPFAPA    G +++  +L  WL  ITG+D+ SLQPNAG+ GEYAGL+ I  YH +RG+ HR++C+IP SAHGTN A+AA+ GM++V V     G++++++LR     + + LS LM+TYPSTHGVYE  I EIC  +HD GGQVY+DGAN+NA
Sbjct:  452 TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEFGRQHPFAPASDTAGLRQLVADLQSWLVLITGYDAVSLQPNAGSQGEYAGLLAIHEYHASRGEPHRDICLIPSSAHGTNAASAALAGMRVVVVDCHDNGDVDLDDLRAKVGEHAERLSALMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNA 671
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBT (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=gcvP PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.517e-69
Identity = 119/220 (54.09%), Postives = 157/220 (71.36%), Query Frame = 2 
Query:   92 TRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            TR S +LT P F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TWP F   HPFAPA    G +++  +L  WL  ITG+D+ SLQPNAG+ GEYAGL+ I  YH +RG+ HR++C+IP SAHGTN A+AA+ GM++V V     G++++++LR     + + LS LM+TYPSTHGVYE  I EIC  +HD GGQVY+DGAN+NA
Sbjct:  452 TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEFGRQHPFAPASDTAGLRQLVADLQSWLVLITGYDAVSLQPNAGSQGEYAGLLAIHEYHASRGEPHRDICLIPSSAHGTNAASAALAGMRVVVVDCHDNGDVDLDDLRAKVGEHAERLSALMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNA 671
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBP (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=gcvP PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.517e-69
Identity = 119/220 (54.09%), Postives = 157/220 (71.36%), Query Frame = 2 
Query:   92 TRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            TR S +LT P F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TWP F   HPFAPA    G +++  +L  WL  ITG+D+ SLQPNAG+ GEYAGL+ I  YH +RG+ HR++C+IP SAHGTN A+AA+ GM++V V     G++++++LR     + + LS LM+TYPSTHGVYE  I EIC  +HD GGQVY+DGAN+NA
Sbjct:  452 TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEFGRQHPFAPASDTAGLRQLVADLQSWLVLITGYDAVSLQPNAGSQGEYAGLLAIHEYHASRGEPHRDICLIPSSAHGTNAASAALAGMRVVVVDCHDNGDVDLDDLRAKVGEHAERLSALMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNA 671
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_MYCBO (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium bovis GN=gcvP PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.517e-69
Identity = 119/220 (54.09%), Postives = 157/220 (71.36%), Query Frame = 2 
Query:   92 TRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            TR S +LT P F +Y TE  ++RY+  L  K+++L  SMIPLGSCTMKLNA  EM  +TWP F   HPFAPA    G +++  +L  WL  ITG+D+ SLQPNAG+ GEYAGL+ I  YH +RG+ HR++C+IP SAHGTN A+AA+ GM++V V     G++++++LR     + + LS LM+TYPSTHGVYE  I EIC  +HD GGQVY+DGAN+NA
Sbjct:  452 TRTSEFLTHPAFTQYRTETSMMRYLRALADKDIALDRSMIPLGSCTMKLNAAAEMESITWPEFGRQHPFAPASDTAGLRQLVADLQSWLVLITGYDAVSLQPNAGSQGEYAGLLAIHEYHASRGEPHRDICLIPSSAHGTNAASAALAGMRVVVVDCHDNGDVDLDDLRAKVGEHAERLSALMITYPSTHGVYEHDIAEICAAVHDAGGQVYVDGANLNA 671
[Close]
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_PROAC (Glycine dehydrogenase [decarboxylating] OS=Propionibacterium acnes GN=gcvP PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.019e-67
Identity = 114/228 (50.00%), Postives = 158/228 (69.30%), Query Frame = 2 
Query:   68 ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            + A P  L R S ++T PVF+ YHTE  ++RY+  L   +  L   MIPLGSCTMKLNA  EM  +TWP+F+ +HPFAP +   G   +  +L  WL  +TG+D+ SLQPNAG+ GEY GL  IR+YH +RGD  RNVC++P SAHGTN A+AA  G+++V V ++  G I+ ++L     AN   ++ +M+TYPSTHGVYE+G+ ++C ++H+ GGQVY+DGAN NA
Sbjct:  468 DRAWPEDLRRTSSFMTHPVFSSYHTETTMMRYLKRLADHDYGLDRGMIPLGSCTMKLNAAAEMEAMTWPAFSQMHPFAPVEDQAGSLRLIRDLEIWLAELTGYDTVSLQPNAGSQGEYTGLAAIRSYHVSRGDTERNVCLVPASAHGTNAASAASAGLRVVVVKSNDDGTIDRDDLAAKIAANEGRIAAIMITYPSTHGVYEDGVRQVCDMVHEAGGQVYIDGANFNA 695
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_MYCGI2.277e-7055.80Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_ROSDO5.072e-7053.57Glycine dehydrogenase [decarboxylating] OS=Roseoba... [more]
GCSP_MYCLE8.652e-7054.46Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCLB8.652e-7054.46Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCTU2.517e-6954.09Probable glycine dehydrogenase [decarboxylating] O... [more]
GCSP_MYCTA2.517e-6954.09Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBT2.517e-6954.09Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBP2.517e-6954.09Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCBO2.517e-6954.09Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_PROAC4.019e-6750.00Glycine dehydrogenase [decarboxylating] OS=Propion... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
back to top