EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_TROWT (Glycine dehydrogenase [decarboxylating] OS=Tropheryma whipplei (strain Twist) GN=gcvP PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.094e-64
Identity = 117/221 (52.94%), Postives = 154/221 (69.68%), Query Frame = 2
Query:   89 LTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            L R S YL  PVFN Y  E  L+RY+  L  K+ +L   MIPLGSCTMKLNA  ++ PV WP FAN+HPFAP   A G  ++ + +  WL  ++G+D+ SLQP AG+ GE AGL+ IR Y+K+  +  R+VC+IP SAHGTN A+A + GM++V V  D +GNI++++LR  A  N   L+ LMVTYPSTHGVYE+ I E+C ++H  GGQVY+DGAN NA
Sbjct:  477 LRRFSGYLKHPVFNNYTGEVALMRYLKALSDKDFALDRGMIPLGSCTMKLNAAFQLEPVLWPEFANLHPFAPRGDADGTLQIIDQIETWLANLSGYDAVSLQPTAGSQGELAGLLAIRGYYKSL-NLDRDVCLIPASAHGTNAASAVLAGMRVVVVACDQQGNIDLDDLRLKASKNAHALAALMVTYPSTHGVYEDNISEVCSVVHKYGGQVYVDGANSNA 696          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSP_TROW8 (Glycine dehydrogenase [decarboxylating] OS=Tropheryma whipplei (strain TW08/27) GN=gcvP PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.094e-64
Identity = 117/221 (52.94%), Postives = 154/221 (69.68%), Query Frame = 2
Query:   89 LTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            L R S YL  PVFN Y  E  L+RY+  L  K+ +L   MIPLGSCTMKLNA  ++ PV WP FAN+HPFAP   A G  ++ + +  WL  ++G+D+ SLQP AG+ GE AGL+ IR Y+K+  +  R+VC+IP SAHGTN A+A + GM++V V  D +GNI++++LR  A  N   L+ LMVTYPSTHGVYE+ I E+C ++H  GGQVY+DGAN NA
Sbjct:  477 LRRFSGYLKHPVFNNYTGEVALMRYLKALSDKDFALDRGMIPLGSCTMKLNAAFQLEPVLWPEFANLHPFAPLGDADGTLQIIDQIETWLANLSGYDAVSLQPTAGSQGELAGLLAIRGYYKSL-NLDRDVCLIPASAHGTNAASAVLAGMRVVVVACDQQGNIDLDDLRLKASKNAHALAALMVTYPSTHGVYEDNISEVCSVVHKYGGQVYVDGANSNA 696          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_TREDE (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Treponema denticola GN=gcvPB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.880e-47
Identity = 99/209 (47.37%), Postives = 135/209 (64.59%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA-XGRL 763
            +E E +R+   L  +   + +   PLGSCTMK N          P+F NIHP  P    +G  E   +LG+ L  ITG D+FSLQP+AGA GE+  L+VIRAYH+ RGDH RN  ++P SAHGTNPA+AAM G +IV++ +D  GN++IEEL+K      ++ + LM+T P+T G++E  I EI +I+H  GG +Y DGAN+NA  GRL
Sbjct:   43 SELEFVRHYMELSKRTHGVDNGFYPLGSCTMKYNPKLNEEVADLPNFTNIHPLQPEHTMKGCIEAMGDLGKKLGEITGMDAFSLQPSAGAHGEFTALLVIRAYHEKRGDHARNKILVPDSAHGTNPASAAMVGCEIVNIPSDKDGNVDIEELKKTV---GNDTAALMLTNPNTLGLFETHIKEIAEIVHKAGGLLYYDGANLNAIMGRL 248          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_BREBN (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.108e-46
Identity = 100/230 (43.48%), Postives = 143/230 (62.17%), Query Frame = 2
Query:   62 EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            EV + +P  L RE+P     V     +E +L+R+   L  +   + +   PLGSCTMK N         +  FA  HP+ P +  QG  E+  NL E L  ITG D+ +LQP AGAAGE+ GLM+IRAYH++RG+ HR   I+P SAHGTNPA+AA+ G+  V++ +D +G ++I+ LR   +A   + + LM+T P+T G++EE I E+ KI+H+ GG +Y DGAN NA
Sbjct:   32 EVASLLPKHLIRETPAELPEV-----SELQLVRHYTELSRRNHGVDNGFYPLGSCTMKYNPKINEDVARYAGFAQTHPYQPEETVQGALELLYNLQEELGEITGMDAVTLQPAAGAAGEWTGLMMIRAYHESRGEAHRTKVIVPNSAHGTNPASAAVAGLDTVTIASDERGLVDIQALR---DAVGPDTAALMLTNPNTLGLFEEDIVEMAKIVHEAGGLLYYDGANANA 253          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_BACHD (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus halodurans GN=gcvPB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.803e-44
Identity = 101/234 (43.16%), Postives = 139/234 (59.40%), Query Frame = 2
Query:   53 LAEEVETAIPSGLTRE-SPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            L + VET IP+   RE +P L +       +E +L+R+   L  +   +     PLGSCTMK N         +P FANIHP+ P  Q QG   +   L   L  ITG D  +LQP AGA GE+ GLM+IRAYH+A GD +R   I+P SAHGTNPA+A + G + V+V TD  G ++++ LR   E   ++ + LM+T P+T G++E  I E+  IIH+ GG++Y DGAN NA
Sbjct:   28 LEQPVETLIPAEFLREEAPELPEV------SELQLMRHYTALSKRNHGVDSGFYPLGSCTMKYNPKINEDVARYPGFANIHPYQPEAQVQGALRLMYELQTALAEITGMDEVTLQPAAGAQGEWTGLMLIRAYHEANGDTNRTKVIVPDSAHGTNPASATVAGFESVTVRTDEDGLVDLDHLR---EVVGEDTAALMLTNPNTLGLFEAHIVEMAAIIHEAGGKLYYDGANSNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_ALKOO (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.803e-44
Identity = 91/204 (44.61%), Postives = 125/204 (61.27%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L +K   +     PLGSCTMK N          P FANIHP+ P +  QG  E+   L + L  + G +  +LQP AGA GE  GLMVI+AYHK RGD  R   IIP SAHGTNPA+AA+ G  +V + ++  G++NI+ L+ A     D ++ LM+T PST G++E  I +I  ++HD GG +Y DGANMNA
Sbjct:   52 SEVDVIRHYTQLSNKNYGVDTGFYPLGSCTMKYNPKLNEDMAVLPGFANIHPYQPEETVQGALELMYKLDKMLAEVAGMERMTLQPAAGAHGELVGLMVIKAYHKKRGDLKRTKIIIPDSAHGTNPASAAVAGFDVVEIKSNPDGSVNIDSLKSALS---DEIAGLMLTNPSTLGLFETNIKQIADLVHDAGGLLYYDGANMNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_PYRAB (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Pyrococcus abyssi GN=gcvPB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.781e-44
Identity = 95/239 (39.75%), Postives = 137/239 (57.32%), Query Frame = 2
Query:   32 VPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMN 748
            V +T     E+V+  IP  L R+SP     V     +E E++++   L      +   + PLGSCTMK N          P  A IHP+      QG   +   L +WL  ITG D F+LQP AGA GE+ G+M+I+AYH  RG+  RN  ++P SAHGTNPA+AAM G K++ + ++  G +++E L  A     +  + LM+T P+T G++E+ I+EI KI+H  GG +Y DGAN+N
Sbjct:   21 VGYTLPKPIEDVDVEIPEKLKRKSPLNLPEV-----SEPEVVKHYTRLSEMNYGVDSGIYPLGSCTMKYNPKINEELAGHPKVAYIHPYQDERTVQGALRIMWELEQWLKEITGMDRFTLQPAAGANGEFTGVMIIKAYHLDRGETQRNEMLVPDSAHGTNPASAAMAGFKVIEIPSNENGTVDLEALENAVS---ERTAGLMLTNPNTLGIFEDEIEEIAKIVHKAGGLLYYDGANLN 251          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_BACCN (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.065e-43
Identity = 87/204 (42.65%), Postives = 131/204 (64.22%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L ++   +     PLGSCTMK N         +P FANIHP       QG  E+  +L E L  ITG D+ +LQP AGA GE+ GLM+IRAYH+A GDH+R   I+P SAHGTNPA+A + G + ++V ++  G +++E+L++      +  + LM+T P+T G++EE I E+ +I+H+ GG++Y DGAN+NA
Sbjct:   52 SELDIMRHYTALSNRNHGVDSGFYPLGSCTMKYNPKINENVARFPGFANIHPLQDEKTVQGAMELMYDLQEHLVEITGMDAVTLQPAAGAHGEWTGLMLIRAYHEANGDHNRTKVIVPDSAHGTNPASATVAGFETITVKSNEHGLVDLEDLKRVV---NEETAALMLTNPNTLGLFEENILEMAEIVHNAGGKLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_PYRFU (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Pyrococcus furiosus GN=gcvPB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.373e-43
Identity = 98/243 (40.33%), Postives = 137/243 (56.38%), Query Frame = 2
Query:   32 VPFTAASLAEEVETAIPSGLTRES----PYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMN 748
            V +T     E+++  IP  L R+S    P L++P   K++T    + Y          +   + PLGSCTMK N        T P  A IHP+      QG   +   L +WL  ITG D F+LQP AGA GE+ G+M+IRAYH   G+  RN  ++P SAHGTNPA+AAM G K++ + ++  G I++E L  A     +  + LM+T P+T G++E+ I EI KIIH  GG +Y DGAN+N
Sbjct:   21 VGYTLPKPIEDIKVDIPEKLRRKSKLELPELSEPEIVKHYTRLSEMNY---------GVDSGIYPLGSCTMKYNPKINEEIATHPKVAYIHPYQDERTVQGALAIMWELEQWLKEITGMDRFTLQPAAGANGEFTGVMIIRAYHLDNGEPQRNEMLVPDSAHGTNPASAAMAGFKVIEIPSNENGTIDLEALENAVS---ERTAGLMLTNPNTLGIFEDEIVEIAKIIHKAGGLLYYDGANLN 251          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_PYRHO (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Pyrococcus horikoshii GN=gcvPB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.099e-43
Identity = 94/239 (39.33%), Postives = 137/239 (57.32%), Query Frame = 2
Query:   32 VPFTAASLAEEVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMN 748
            V +T     E+V+  IP  L R++P     V     +E E++++   L      +   + PLGSCTMK N          P  A IHP+      QG  ++   L +WL  ITG D F+LQP AGA GE+ G+M+I+AYH  RGD  R   ++P SAHGTNPA+A+M G K+V + ++  G +++E L  A     +  + LM+T P+T G++E+ I+EI KI+H  GG +Y DGAN+N
Sbjct:   21 VGYTLPKPIEDVKVEIPEKLKRKTPLELPEV-----SEPEVVKHYTRLSEMNYGVDSGIYPLGSCTMKYNPKINEEIANHPKVAFIHPYQDERTVQGALKIMWELEQWLKEITGMDRFTLQPAAGANGEFTGVMIIKAYHLDRGDTQRTEILVPDSAHGTNPASASMAGFKVVEIPSNENGTVDLEALENAVS---ERTAGLMLTNPNTLGIFEDEIEEIAKIVHKVGGLLYYDGANLN 251          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_TROWT1.094e-6452.94Glycine dehydrogenase [decarboxylating] OS=Tropher... [more]
GCSP_TROW81.094e-6452.94Glycine dehydrogenase [decarboxylating] OS=Tropher... [more]
GCSPB_TREDE7.880e-4747.37Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BREBN5.108e-4643.48Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BACHD2.803e-4443.16Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_ALKOO2.803e-4444.61Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_PYRAB4.781e-4439.75Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_BACCN1.065e-4342.65Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_PYRFU2.373e-4340.33Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_PYRHO3.099e-4339.33Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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