EY659350

Overview
NameEY659350
Unique NameEY659350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12632 contig Csv1_Contig12632:598..1460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_CHLPD (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.686e-38
Identity = 92/245 (37.55%), Postives = 139/245 (56.73%), Query Frame = 2
Query:   20 GGKSVPFTAASLAE-EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            G K    +   L E  V   IPS   R +P     V      E E++R+   L +    +  +M PLGSCTMK N          P F+ +HP  P++  QG   +   L   L  I G  + SLQP AGA GE  G+++I+ YH+A+G   RN  ++  SAHGTNPA+AA+ G +I+SV ++A G  ++E+L+   ++   +++ LM+T P+T G++E+ I  I +++H+NG  +YMDGANMNA
Sbjct:   13 GRKGYSLSKNDLPETSVAAVIPSKFLRTTPAELPEV-----PESEVVRHFIRLSNLNYHVDKNMYPLGSCTMKYNPKVNDYTCDLPGFSTLHPLQPSETTQGALRLMYELSSMLSEIAGMAAVSLQPAAGAHGELTGILLIKKYHEAQG-KMRNKLLVVDSAHGTNPASAAIAGYEIISVRSNADGRTDLEDLKARLQS---DVAALMLTNPNTIGLFEKDILAIERMVHENGSLLYMDGANMNA 248          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_PELPB (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.490e-37
Identity = 91/245 (37.14%), Postives = 136/245 (55.51%), Query Frame = 2
Query:   20 GGKSVPFTAASLAEE-VETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            G K    +   L E+ +E  IPS   R +P     V      E E++R+   L +    +  +M PLGSCTMK N          P F+ +HP  P +  QG  ++   L E L  I G  + +LQP AGA GE  G+++I+ YH++ G     + ++  SAHGTNPA+AA+ G  I+SV  +A G  ++++LR   +    +++ LM+T P+T G++E  I  I K++HDNG  +YMDGANMNA
Sbjct:   13 GRKGYSLSGNELPEQPLENIIPSKYLRTTPAELPEV-----AESEVVRHFVRLSNLNYHVDKNMYPLGSCTMKYNPKINDYTCDLPGFSALHPLQPGETTQGALQLMFELAEMLREIAGMAAVTLQPAAGAHGELTGILLIKKYHESIGSKRHKLLVVD-SAHGTNPASAALAGYDIISVKGNADGRTDLDDLRSKLDG---DVAALMLTNPNTIGLFETEILAISKMVHDNGSLLYMDGANMNA 248          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_UNCTG (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=gcvPB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.945e-37
Identity = 91/230 (39.57%), Postives = 130/230 (56.52%), Query Frame = 2
Query:   62 EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E++  IP  L R S      +     TE++L R+   L  K  +L  S  PLGSCTMK N           +F  IHP+ P    QG  ++   L + LC I+G D FSLQ  AGA GE+ GL++I  Y K+     R   IIP +AHGTNPA+AA+ G   VS+ +++ G+I  E+L+K        ++ +M+T P+T G +E+ I EI +I+H+NG  +Y DGAN+NA
Sbjct:   23 EIDAQIPENLKRSSGLGLPSI-----TENDLSRHFTNLSRKNYALSTSFYPLGSCTMKYNPLINERVAKNEAFNFIHPYQPGKSMQGVLKIMYELEKDLCEISGMDCFSLQQAAGAHGEFTGLLIIAKYFKSI-KQKRTKIIIPDTAHGTNPASAALAGFGTVSLKSESDGSILPEKLKKIL---TPEIAAVMLTVPNTLGAFEKNIPEISRIVHENGSLLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THEMA (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thermotoga maritima GN=gcvPB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.945e-37
Identity = 84/228 (36.84%), Postives = 130/228 (57.02%), Query Frame = 2
Query:   68 ETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            E ++P    R +P     V     +E +L+R+   L  K  S+   + PLGSCTMK N            F  IHP+ P +  QG   +   L + LC ITG D  +LQP AGA GE  G++++R Y K RGD  R   ++P SAHGTNPA+A+M G ++V +     G +++E+L+K  +   + ++ +M+T P+T G++E+ I +I ++ H+ G  +Y DGAN+NA
Sbjct:   23 EYSLPDRFLRRTPPELPEV-----SEPDLVRHYTNLARKNYSVDLGIYPLGSCTMKYNPKLNEKAANLEGFREIHPYQPVETVQGSLRLMYELKKMLCEITGMDDMTLQPAAGAHGELTGMLIVREYFKNRGDTGRKKVLVPDSAHGTNPASASMVGFEVVEI-KSKNGMVDVEDLKKLLD---EEVAAVMLTNPNTLGLFEKDILKIAEMTHECGALLYYDGANLNA 241          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_FERNB (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.945e-37
Identity = 92/231 (39.83%), Postives = 135/231 (58.44%), Query Frame = 2
Query:   65 VETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT-TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            V+  IP  L R+   L   V     +E +++R+   L SK  S+     PLGSCTMK N    E M +    F  +HP  P +  QG  ++  +L E LC ITG D  +LQP AGA GE  GL+V RAY + +G+   R   ++P SAHGTNPA+AAM G ++V + +   G +N+EEL+   +   +N++ +M+T P+T G++E+ I  I K+ H+ G  +Y DGAN+NA
Sbjct:   24 VDCGIPEHLVRKEKPLLPEV-----SEVDVVRHYTELASKNYSVDKGFYPLGSCTMKYNPKINEDMAML---FTQLHPMQPRETIQGAIDLMGHLKEMLCEITGTDDMTLQPAAGAHGELTGLLVARAYFEDKGELDKRRKVLVPDSAHGTNPASAAMAGFEVVELKSGKDGCVNLEELKAHLD---ENVAVIMLTNPNTLGLFEKDILTIAKMAHEVGALLYYDGANLNA 243          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_THISH (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.541e-37
Identity = 86/205 (41.95%), Postives = 117/205 (57.07%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L  K  S+     PLGSCTMK N          P F   HP AP   +QG+      L E L  +TG     SL P AGA GE+AG+ +IRAYH AR D  R   ++P +AHGTNPATA MCG  +  + TD  G++++E L+ A      + + +M+T PST GV+E  I EI  ++H  GG +Y DGAN+NA
Sbjct:   43 SELDVVRHYTRLSQKNFSIDTQFYPLGSCTMKYNPRACNSLAMLPGFLGRHPHAPDTHSQGFLACMFELQEMLRDVTGMKGGVSLTPMAGAQGEFAGVAMIRAYHDARKDTARTEILVPDAAHGTNPATATMCGYTVKEIPTDDSGDVDMEALKAAL---GPHTAGIMLTNPSTLGVFERRIKEIADLVHQAGGLLYYDGANLNA 244          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_AQUAE (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Aquifex aeolicus GN=gcvPB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.541e-37
Identity = 83/204 (40.69%), Postives = 120/204 (58.82%), Query Frame = 2
Query:  140 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E +++R+   L     ++  +M+PLGSCTMK N       V    F N+HP  P +  Q   ++   L E L  + GF   SLQP AGA GE  GL++I AYH+ RG+  + V +IP SAHGTNPA+AA+CG  I  V +D KG ++ E+  K  +   + ++ LM+T P+T G++E  I EI + +H     +YMDGAN NA
Sbjct:   46 SELDVVRHYTNLSHLNYAVDTTMVPLGSCTMKYNPRINEELVNKKEFLNVHPLTPEEYIQPLLKLVYELKELLKELGGFAEVSLQPAAGAHGELLGLLLIHAYHQDRGNKEKKVVLIPDSAHGTNPASAAICGFDIKVVKSDKKGELDFEDFIKKLD---ERVAALMITNPNTLGIFERKIKEIAEELHKRDALLYMDGANFNA 246          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_OCEIH (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Oceanobacillus iheyensis GN=gcvPB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.318e-37
Identity = 85/230 (36.96%), Postives = 137/230 (59.57%), Query Frame = 2
Query:   62 EVETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            ++E  + S   R++P     V     +E +++R+   L ++   +     PLGSCTMK N            F++IHP+      QG   M  +L E L  ITG    SLQ  AGA GE+  LM+IRA+H++RGD+ R   I+P SAHGTNPA+AA+ G + V+V ++ +G +++++LR+      ++ + LM+T P+T G++E+ I  + +I+H+ GG++Y DGAN+NA
Sbjct:   31 DLEAELGSEYVRQTPPELPEV-----SELDIIRHYTGLSNRNYGVDSGFYPLGSCTMKYNPKINEDIARLDGFSHIHPYQDVSTVQGAMAMMFDLQESLKEITGMHEVSLQSAAGAQGEWTALMMIRAFHESRGDYGRTKVIVPDSAHGTNPASAAVAGFEAVTVKSNQEGLVDLDDLRQVV---GEDTAALMLTNPNTLGLFEKDILTMAEIVHEAGGKLYYDGANLNA 252          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_KOSOT (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.318e-37
Identity = 85/243 (34.98%), Postives = 141/243 (58.02%), Query Frame = 2
Query:   41 TAASLAEEVETAIPSGLTRESPYLTDPVFNKYH------TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            T  +L EE +  I     R S Y+ + +  K        +E +++R+   L  K  S+ +   PLGSCTMK N            F+ +HP+ P ++ QG  E+   L   L  ITG D+F+LQP AGA GE  G+++++ Y + +G++ R   I+P SAHGTNPA+A+M G ++V + ++  G I+++ L  A +   ++++ +M+T P+T G++E+ I +I ++ H NG  +Y DGAN+NA
Sbjct:   12 TGYTLPEEKKDEI-----RPSDYIPEHLLRKELPGLPECSEIDVVRHYTELTRKNYSVDNGFYPLGSCTMKYNPKLNEKIAALEGFSLLHPYEPIEKVQGALEVMYRLQTLLSEITGMDAFTLQPAAGAHGELTGMLIVKKYFEVKGENQRTKVIVPDSAHGTNPASASMAGFQVVEIKSNDNGIIDLDNLEAALD---ESVAAIMLTNPNTLGLFEKDIIKIAEMAHKNGTLLYYDGANLNA 246          
BLAST of EY659350 vs. ExPASy Swiss-Prot
Match: GCSPB_CHLCH (Probable glycine dehydrogenase [decarboxylating] subunit 2 OS=Chlorobium chlorochromatii (strain CaD3) GN=gcvPB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.334e-37
Identity = 84/229 (36.68%), Postives = 130/229 (56.77%), Query Frame = 2
Query:   65 VETAIPSGLTRESPYLTDPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 751
            +E+ IP+ L R+       V      E+E++R+   L +    +  +M PLGSCTMK N            F+ +HP  P    QG  ++   L   L  I G    SLQP AGA GE  G+++I+ YH+ RGD    + ++  SAHGTNPA+AA+ G + +SV ++  G  ++E+LR   +    +++ LM+T P+T G++E+ I +I +++H NG  +YMDGANMNA
Sbjct:   29 LESIIPASLLRKEAVELPEV-----AENEVVRHFVRLSNLNYHVDKNMYPLGSCTMKYNPKVNDYTCDLSGFSALHPLQPTSTTQGALQLMYELSNMLAEIAGMAGVSLQPAAGAHGELTGILLIKKYHEVRGDKRHKLLVVD-SAHGTNPASAALAGYETISVKSNGDGRTDLEDLRSKLDG---DVAALMLTNPNTIGLFEKEIVQIAEMVHANGSLLYMDGANMNA 248          
The following BLAST results are available for this feature:
BLAST of EY659350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSPB_CHLPD6.686e-3837.55Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_PELPB1.490e-3737.14Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_UNCTG1.945e-3739.57Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THEMA1.945e-3736.84Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_FERNB1.945e-3739.83Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_THISH2.541e-3741.95Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_AQUAE2.541e-3740.69Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_OCEIH3.318e-3736.96Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_KOSOT3.318e-3734.98Probable glycine dehydrogenase [decarboxylating] s... [more]
GCSPB_CHLCH4.334e-3736.68Probable glycine dehydrogenase [decarboxylating] s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659350 ID=EY659350; Name=EY659350; organism=Citrus sinensis; type=EST; length=862bp
AGCTTTTCTACTTTTCGCCGGGGGCAAATCAGTTCCATTCACTGCTGCAT
CTCTGGCTGAAGAGGTTGAGACTGCAATTCCGTCTGGATTAACAAGGGAG
AGTCCGTATCTGACAGATCCTGTTTTTAACAAATACCACACAGAGCATGA
ATTGCTTAGATACATTCATCTGTTACAATCAAAGGAGCTCTCACTATGCC
ATAGTATGATTCCATTGGGATCTTGTACAATGAAATTGAATGCAACAACT
GAAATGATGCCAGTGACATGGCCTAGCTTTGCTAACATACACCCTTTTGC
CCCTGCTGACCAGGCTCAGGGTTATCAGGAAATGTTTAACAATCTGGGTG
AGTGGCTGTGTACCATTACTGGCTTTGACTCTTTCTCTTTGCAACCAAAT
GCTGGTGCAGCTGGTGAGTATGCTGGGCTCATGGTTATCCGCGCTTATCA
TAAGGCAAGAGGAGACCATCACCGCAATGTGTGCATTATACCCGTGTCAG
CCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGTT
TCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGAA
GGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTACC
CTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGATA
ATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATGC
TCANGGTCGTCTGACAGCCCTGGNTACATTGGAGCTGATGTTTGCATCTC
ATCTCCACAACATTTGCATTCGCATGGAGTGGNTGTCCCTGTATGGGCCT
ATTGTGTGAAGA
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