EY659348

Overview
NameEY659348
Unique NameEY659348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 351
            K  ET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   43 KMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.263e-26
Identity = 54/118 (45.76%), Postives = 75/118 (63.56%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 351
            K  ET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   52 KMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.172e-25
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFE-LEKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            K  ET SYLPPL+D+ + K++ Y+LR+ W PCLEF   ++ +V  ++    G     Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQVQ   FL  +P
Sbjct:   45 KFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 351
            K  ET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   53 KMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.000e-25
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 351
            K  ET S+LPPL+DE + K++ Y+L + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   FL  +PP
Sbjct:   52 KMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.296e-24
Identity = 51/112 (45.54%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   34 SYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHHSSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 351
            SYLPPL+DE + K++ Y+L + W PCLEF   ++ +   ++    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   FL  +PP
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.752e-21
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            +  ETLSYLPPLSD+ + ++I Y++R G+IP +EF  +                  YWTMWKLP++  T   +VL EV E + EYP+ ++R++GFDN +Q Q +SF+  KP
Sbjct:    8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATTC------------YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.136e-20
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            K  ETLSYLPPLSD+ + +++ Y++  G+IP +EFE  K      HH          WT+WKLP++  + A +VL EV E + EY   ++R++GFDN +Q Q +SF+  KP
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFE--KDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.937e-20
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            +  ETLSYLPPL+D+ + K++ +LL  G+IP +EFE +      E H         +WTMWKLP +G   A +VL EV E + E P+ ++R+IGFDN +Q Q +SF+  KP
Sbjct:    8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106          
BLAST of EY659348 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 4.315e-20
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   16 KNLETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 348
            +  ET SYLPPLSD  +  +I Y++  G+ P +EF           HS+P  +   YWTMWKLP++ C    QVL EV E + EY   ++R+ GFDN +Q Q +SF+  +P
Sbjct:   10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108          
The following BLAST results are available for this feature:
BLAST of EY659348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RBS2_ACEAT5.263e-2645.76Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT5.263e-2645.76Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_BATOE1.172e-2545.30Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_ACEAT2.000e-2544.92Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT2.000e-2544.92Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_ACECL1.296e-2445.54Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_PROHO1.752e-2142.34Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNP21.136e-2042.34Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNY31.937e-2044.14Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP64.315e-2041.44Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-B09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659348 ID=EY659348; Name=EY659348; organism=Citrus sinensis; type=EST; length=598bp
CCCGCGTCCGGCTTGAAGAATCTCGAGACTCTCTCATACCTCCCGCCACT
GTCCGATGAAGCTTTGCTCAAGGAAATCAGTTACCTTCTCCGCTCCGGCT
GGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACC
AGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGT
TGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGT
TCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACT
TTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATATATTTTAA
TAATTGAATCCTTTGTTTTCAGTTTCATTAAAAAAAAAAAAAAAAAAA
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