EY659337

Overview
NameEY659337
Unique NameEY659337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2138 contig Csv1_Contig2138:187..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659337 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.335e-36
Identity = 85/246 (34.55%), Postives = 128/246 (52.03%), Query Frame = 3
Query:   42 LSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQG---PTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNR--EQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC------------NNCGXXXXXXXXXXD---AQRQWQARDELDATSRRRLRWVQKYFMIYNYCTDLKRF 719
            L LD+ +GSGF S   Y  G     +KL    +AG V A+Y S+       HDE+D EFLGN+ G+P+   TN++  G  NR  E+++ LWFDP++ FH YS++W P  +IF VD++PIR     E +   +P+ +PM +Y+++W+A  WAT GG    D+T +PF + +++     C            NN G          D       +       AT+ RR R   + +M Y+YC D  R+
Sbjct:   64 LLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQATAMRRFR---ERYMYYSYCYDTIRY 305          
BLAST of EY659337 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.855e-33
Identity = 78/237 (32.91%), Postives = 134/237 (56.54%), Query Frame = 3
Query:   15 IFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGXXXXXXXXXXDAQRQWQARDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQ 725
            + N    L L+LD+ SGSGF+S+  Y  G  ++++K     S G +T++YL S+   HDE+ F+ LG  +G PY+L+TN++  G+G ++Q+F LWFDPT+++H+YS +W P  ++F VD+ PIRV+  +++  V +P  Q M +  S+ N       G ++  D  + P+ A    F+A     C           D +  W  R +L +  +      +K ++ Y+YC+D +R+P+
Sbjct:   38 VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGK-NGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVY--SKNPDVYYPSVQTMFLMGSVQN-------GSII--DPKQMPYIA---KFQASKIEGCKTEFMGIDKCTDPKFWWN-RKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPK 258          
BLAST of EY659337 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 3
Query:   33 LLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTH----DEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPKNQPMKIYSSLWN---ADDW 476
            L S + ++   + ++S   Y +G  ++ +K     + G V++++  + GP H    DEID EFLG  + +   +  N +  G G  E+   L FD ++ FHTY+  W+P ++ + VD     V K+  +  +P   + P KI  +LWN    DDW
Sbjct:   74 LTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYT-GPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 215          
The following BLAST results are available for this feature:
BLAST of EY659337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH29_ARATH1.335e-3634.55Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH6.855e-3332.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
GUB_PAEMA7.375e-1129.68Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659337 ID=EY659337; Name=EY659337; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGAAGATTTTCAATGGCGGCCAACTTCTTTCTCTGTCTCTA
GACAGAGTTTCTGGCTCTGGTTTTCAGTCCAAGAGAGACTACTTATTTGG
CAGAATTGATATGCAGCTCAAGCTTGTTGCTGGTGACTCTGCTGGCACTG
TCACTGCCTACTATCTGTCTTCGCAAGGGCCGACTCATGATGAGATTGAT
TTTGAGTTCTTGGGAAATGTGAGCGGTCAGCCTTACATTCTTCACACAAA
TATATTCGCTCAGGGTAAAGGCAACCGGGAGCAACAATTCTATCTCTGGT
TTGATCCCACAAGAAACTTCCACACTTACTCCGTCATCTGGAAGCCCCAA
CACGTCATCTTCTTGGTAGATAACATTCCCATTAGAGTGTTCAAAAATGC
TGAATCTCTTGGAGTTCCCTTCCCTAAAAACCAACCAATGAAGATTTACT
CAAGTCTTTGGAATGCTGATGACTGGGCTACAAGAGGAGGGTTGGTGAAA
ACTGACTGGACTAAGGCTCCTTTCACAGCATATTACCGTAACTTCAGAGC
CATTCCCTGTAACAACTGTGGCTCTAAATGGTCATCAAGCTCCTCAGTTT
CGGATGCTCAGCGTCAATGGCAGGCTAGAGACGAGCTTGATGCCACAAGC
AGAAGAAGACTCAGATGGGTTCAGAAATATTTCATGATTTATAACTATTG
CACTGATTTAAAACGATTCCCACAAGGCTTTTTCTTCTGAGTGCAGACAA
CACTAGCTGAAGTTGATGACTGGGACTCTGTGGTTGGCTTTGAGCAGTAT
TCTTTGNTTTGAATAAATCTCATCCCTNTTCTCTCCNTTCTGGGTACTCG
TTGTTTGATCCTTGNAGGTTTGTGTGTTGGATATTTCATGCAT
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