EY659334

Overview
NameEY659334
Unique NameEY659334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8125 contig Csv1_Contig8125:1287..1731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY659334 vs. ExPASy Swiss-Prot
Match: S5A2_RAT (3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Rattus norvegicus GN=Srd5a2 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 36/112 (32.14%), Postives = 63/112 (56.25%), Query Frame = 1 
Query:   64 DLKF-LGMILFLLGISGNFYHHNLLSKMRRNGEKEYKIPTSGLFDKVVCPHYLFEILGFWGIFFIAQTLYAFCYAIGVTFYLMGRSYATRAWYLSKFEDFPKHVNSIFPYIF 396
            D++F  G+ LF+LG+  N +    L ++R+ GE  Y+IP  GLF  V   ++L EI+ + G      ++ AF +A     +L  +++    +YL  F+D+PK   ++ P+IF
Sbjct:  143 DVRFSFGVFLFILGMGINIHSDYTLRQLRKPGEVIYRIPRGGLFTYVSGANFLGEIIEWIGYALATWSVPAFAFAFFTLCFLGMQAFYHHRFYLKMFKDYPKSRKALIPFIF 254
The following BLAST results are available for this feature:
BLAST of EY659334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
S5A2_RAT6.779e-1132.143-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-002-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659334 ID=EY659334; Name=EY659334; organism=Citrus sinensis; type=EST; length=445bp
CCACGCGTCCGCACCGCAGCTATGATATATGTTCAAAGTGAAGGATTAGG
AGAGCCAACTATTGATTTGAAGTTTTTGGGGATGATTCTATTTTTGTTGG
GAATAAGCGGCAATTTCTACCACCACAATCTGCTTTCAAAAATGAGAAGA
AACGGTGAAAAAGAATACAAGATTCCCACGAGTGGTTTATTTGATAAAGT
TGTATGCCCCCATTACTTGTTTGAGATATTAGGGTTTTGGGGCATCTTTT
TCATTGCTCAAACTCTGTATGCATTTTGCTATGCTATAGGTGTAACTTTT
TACTTAATGGGAAGAAGCTATGCAACTAGGGCATGGTATCTTTCCAAATT
TGAAGACTTCCCCAAACATGTCAACTCCATTTTTCCATATATTTTTTAGA
AAGGAAAGAAATTAATTCCAATAAAAATTGAATTTTTCTGAGTTG
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