EY659316

Overview
NameEY659316
Unique NameEY659316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY659316 vs. ExPASy Swiss-Prot
Match: LRC40_XENTR (Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 47/129 (36.43%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:  322 LITLDLSKNQLTGIIPTSLGNSRNLKRHTLGQNLLTGKIPPSLGHLTSLQALSLRHNLLAGEIPPSIGRLSSLEVLALRSNQLSGEIPRELGDLSQLRYISLPADGLSGTLPPKLGKLNNLQELWLTSN 708
            L+ LD+  NQ+  + P ++    NL++  +  N +  ++P  L HL +L++L L+HN L  E+P SIG LS LE L + +N L   I   +G L+ L   +L ++ L+  LP ++GK+ NL++L  TSN
Sbjct:  107 LVVLDIHDNQIVSL-PCAIKELTNLQKLNISHNKIK-QLPKELQHLQNLKSLLLQHNQLE-ELPDSIGHLSILEELDVSNNCLRS-ISSSVGQLTGLVKFNLSSNKLTA-LPTEIGKMKNLKQLDCTSN 230
[Close]
BLAST of EY659316 vs. ExPASy Swiss-Prot
Match: LAP2_HUMAN (Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 44/129 (34.11%), Postives = 72/129 (55.81%), Query Frame = 1 
Query:  322 LITLDLSKNQLTGIIPTSLGNSRNLKRHTLGQNLLTGKIPPSLGHLTSLQALSLRHNLLAGEIPPSIGRLSSLEVLALRSNQLSGEIPRELGDLSQLRYISLPADGLSGTLPPKLGKLNNLQELWLTSN 708
            + TL + +NQL   +P S+G   +++      N +   +P S+G LT+L+  +  HN L  ++PP IG   ++ VL L SN+L   +P E+GD+ +L+ I+L +D     LP    KL  L  +WL+ N
Sbjct:  278 ITTLKIDENQLM-YLPDSIGGLISVEELDCSFNEVEA-LPSSIGQLTNLRTFAADHNYLQ-QLPPEIGSWKNITVLFLHSNKLE-TLPEEMGDMQKLKVINL-SDNRLKNLPFSFTKLQQLTAMWLSDN 401
The following BLAST results are available for this feature:
BLAST of EY659316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
LRC40_XENTR5.741e-1136.43Leucine-rich repeat-containing protein 40 OS=Xenop... [more]
LAP2_HUMAN9.792e-1134.11Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659316 ID=EY659316; Name=EY659316; organism=Citrus sinensis; type=EST; length=902bp
ATCAAATTAGCGCATGCAAAATGATCTAACTACTGAGTGACTGAGCAAAC
TGATAGTGTAAAACAACCATCTTAGAATTCAAAGTTGAAAATAAAAAAAT
AAATTGGATGAACGGTCTTCATGGGCATCTGGTGGTTCTAATTTCTAAAA
CAGGGCTCTTACTAATCCTTGTTACTGCTATGTCAACTTGGCTCCTAATT
CAAATTACAGAGTACTGCTGAAAATGATACTAAAGTAGGAGATCTACCTG
CTCATGAAGTGATCTATCCGACAACACACTTCATGGTTCCATTCCTTACC
ACATGGGGGATCTATTTCATGCTTATCACTCTAGATTTATCAAAAAATCA
ATTAACTGGGATCATACCAACAAGCTTGGGGAATTCGAGGAACCTAAAAA
GACACACGTTGGGCCAGAACTTACTCACGGGGAAGATACCACCATCGTTG
GGGCACTTGACATCTCTTCAAGCATTGTCTCTGCGCCATAACTTACTCGC
GGGGGAGATACCACCATCGATTGGGCGCTTATCGTCTCTTGAAGTATTGG
CACTAAGGAGCAACCAACTATCGGGGGAAATTCCTCGTGAACTGGGAGAC
CTCTCTCAGCTCCGGTATATATCTCTGCCGGCAGATGGACTCAGCGGTAC
ACTCCCACCAAAACTTGGAAAATTAAACAATCTTCAAGAATTGTGGCTGA
CATCCAACAATGTAATGGGGTGATTTGCCACATGATTATGAGGATCTAAA
GGATCTGACCACTTTTGAAATATCAGGGAAATATTTGTCTGGTCCGGATC
CCCACATTCATTGCAAAATGGGTCAACCTCTATTCTCTGGTTGTCACTGA
CCTACAAACGAAAGGCTGATCCTTCCCAGATCAGCTAATTNGAGTAGTAT
AT
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