EY659273

Overview
NameEY659273
Unique NameEY659273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659273_ssr18 microsatellite EY659273_ssr18:18..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY659273 vs. ExPASy Swiss-Prot
Match: NDRG4_MOUSE (Protein NDRG4 OS=Mus musculus GN=Ndrg4 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18
Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = 3
Query:  114 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACRR 674
            I+T +G L V I G    ++PA++TY D+ LN+  CF   FF  E    +  +F + H++ PG + GA+         S++ LA  +  V+ HFG   V+ +GV AGAY+L  FA+ +   V GL+L++       W +W   K+        G+   + + +L   FS+E      V  +++VQ+ R+
Sbjct:   11 IETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFN-TFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLS-------GLTSTLPDTVLSHLFSQE----ELVNNTELVQSYRQ 187          
BLAST of EY659273 vs. ExPASy Swiss-Prot
Match: NDRG3_XENLA (Protein NDRG3 OS=Xenopus laevis GN=ndrg3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.280e-17
Identity = 50/150 (33.33%), Postives = 87/150 (58.00%), Query Frame = 3
Query:   99 GKDNLIKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKV 542
            G+++ I+T+ G + VT+ G+   ++P L+TY D+ LN+ SCF   F   +   +  H F + HI+ PG + GA +        ++D+LA+ +  VL H  L +++ +GV AGAY+L+ FA+     V GL+L++    A  W +W  +K+
Sbjct:   30 GQEHDIETALGVVHVTMSGNTRGNRPVLLTYHDIGLNHKSCFNSFFNFDDMHEITQH-FAVCHIDAPGQQQGAPSFPTGYQYPTMDELAEMLTAVLTHLNLRSIIGIGVGAGAYVLSRFALNNPLLVEGLVLLNIDPCAKGWIDWAASKL 178          
BLAST of EY659273 vs. ExPASy Swiss-Prot
Match: NDRG_DICDI (NDRG-like protein OS=Dictyostelium discoideum GN=DDB_G0270324 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16
Identity = 58/233 (24.89%), Postives = 113/233 (48.50%), Query Frame = 3
Query:   42 MADSSSDSVSIDMETPPPSGKDNLIKTSHGSL----SVTIYGDQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSKEVRGNAQVPESDIVQACRRLLDERQSSXCWHFLEALM 728
            + +S  + V  + +   P+   + ++T HG L     +      + P +++Y DL LN+ +CF   F  P    +L +   I HI  PGHEF A  I   +   S+ ++A+ I  VL++F +   + +G  AG  ILT +++ Y   V+GL+LV  + K+ SW +W+ + V    L        V++ L+  Y++     N +    D+++  ++ +        +H++ + +
Sbjct:   11 VTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIISYHDLGLNHTTCFSPFFNHPNMNHILPY-LNIIHIEAPGHEFNAETIPSSQ-YPSITEMAEDIQYVLDYFKVKVFIGLGAGAGGCILTQYSIFYPRSVVGLVLVGSVIKSFSWLDWVKSWVELTTLPSLKNPTGVRKYLIDHYYA----DNLEETNPDLLEIIKKEMVLINPDNLYHYVHSFV 237          
The following BLAST results are available for this feature:
BLAST of EY659273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NDRG4_MOUSE9.803e-1830.69Protein NDRG4 OS=Mus musculus GN=Ndrg4 PE=1 SV=1[more]
NDRG3_XENLA1.280e-1733.33Protein NDRG3 OS=Xenopus laevis GN=ndrg3 PE=2 SV=1[more]
NDRG_DICDI3.154e-1624.89NDRG-like protein OS=Dictyostelium discoideum GN=D... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659273 ID=EY659273; Name=EY659273; organism=Citrus sinensis; type=EST; length=851bp
AGAAGAGTAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAAAGATGGCAGAT
TCTTCAAGCGATTCGGTTTCCATTGATATGGAGACTCCTCCTCCTAGTGG
CAAGGACAATCTTATAAAAACTTCCCATGGTTCTTTGTCTGTTACCATCT
ATGGGGACCAGGACAAGCCAGCTCTTGTCACTTATCCTGATTTAGCTCTA
AACTATATGTCCTGCTTTCAAGGATTATTCTTCTGCCCAGAAGCATGTTC
CTTGCTACTGCACAACTTTTGCATATATCATATAAATCCTCCTGGCCACG
AGTTTGGAGCTGCGGCAATTAGTGATGATGAACCTGTACTCTCTGTTGAT
GATTTAGCGGATCAAATCGCTGAGGTTCTTAACCATTTTGGACTTGGTGC
AGTGATGTGTATGGGGGTTACAGCTGGAGCTTACATTCTTACACTATTTG
CTATGAAATATAGGCACCGTGTACTTGGGTTAATCCTAGTTTCTCCTCTG
TGCAAAGCACCCTCTTGGACAGAATGGTTGTATAATAAGGTAATGTCAAA
TTTACTCTACTACTATGGCATGTGTGGGGTGGTGAAGGAATTATTGCTAA
AGCGGTACTTCAGCAAGGAAGTTCGTGGTAATGCCCAAGTACCAGAATCT
GATATAGTTCAGGCATGCAGAAGACTGCTGGATGAAAGACAGAGCTCANN
ATGTTGGCATTTTCTTGAAGCATTAATGGGAGACCCGACATCAGCGAAGG
GNCTGCGGAACTGNCATGCCGCTCTCTAATATTGNTGGTGAAAGCTCTNC
TTNCATTNCTGAGCTGTCACATGACTTCTAAAATGATAGAAAAATANTGC
T
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