EY659256

Overview
NameEY659256
Unique NameEY659256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659256 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.216e-13
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  511 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAL*GSAPINLSDRLNQCXR 666
            +GW+Y   TED++TGF++H  GWRS+YC  +  A  G+APINL++RL Q  R
Sbjct:  567 VGWVYNIATEDVVTGFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILR 618          

HSP 2 Score: 28.4906 bits (62), Expect = 4.216e-13
Identity = 10/22 (45.45%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  657 VLXWALGSVEILFSRHCPIWYG 722
            +L W+ GS+E+ FS +CP+  G
Sbjct:  616 ILRWSGGSLEMFFSHNCPLLAG 637          
BLAST of EY659256 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.193e-12
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  511 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAL*GSAPINLSDRLNQCXR-GL*XLWKFFSVGTVLSGMVWWSIEIS*EVCLC*HHYHSLTAIPLLMYCTLPTV 825
            IGW+YG+VTED++TG++MH +GWRS YC     A  G+APINL++RL Q  R     L  FFS    L G  +  +     V       +  TA+ L+ Y T+P +
Sbjct:  626 IGWVYGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNPLFGSTF--LHPLQRVAYINITTYPFTALFLIFYTTVPAL 729          
BLAST of EY659256 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 7.831e-11
Identity = 25/53 (47.17%), Postives = 37/53 (69.81%), Query Frame = 1
Query:  508 QIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAL*GSAPINLSDRLNQCXR 666
            +IG+ YGS+ ED  TG+++H  GWRS++C PKR A  G +P +L D ++Q  R
Sbjct:  455 KIGFRYGSLVEDYYTGYRLHCEGWRSVFCRPKRAAFCGDSPKSLIDVVSQQKR 507          

HSP 2 Score: 28.4906 bits (62), Expect = 7.831e-11
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  666 WALGSVEILFSRHCPIWYGM 725
            WA+G +E+  SR+ PI YG+
Sbjct:  508 WAIGLLEVAISRYSPITYGV 527          
The following BLAST results are available for this feature:
BLAST of EY659256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CSLF8_ORYSJ4.216e-1351.92Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CSLF6_ORYSJ7.193e-1240.57Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLG3_ARATH7.831e-1147.17Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659256 ID=EY659256; Name=EY659256; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGCATATTTGCCTACGCAGGTGCTGGATTTGATGATGAAAA
GTCACTACTTATGTCACAAATGAGCCTGGAGAAGCGATTTGGTCAATCAG
CTGTTTTTGTTGCTTCTACACTTATGGAGAATGGTGGTGTTCCACAGTCT
GCAACACATGAAACTCTTCTTAAGGAGGCCATTCATGTTATCAGTTGTGG
TTACGAGGATAAAACAGAATGGGGATCTGAGGTATGTTGTCTGATTTAAC
AGACACTGATGTATTTCCAAGTTTCTGTCTATATAAAGTGACTGTGTGAA
TCTAAGCAACTGAAATGACTCATTGTTCATCGAACCATTTCTACTATGCT
ACTGAATGACCCCTTGCGATGTTATTATAATTCCAGTTCATCTGTAAATA
ATATGGCACACCCACCAACACACATTTCTTATTGAAGAAATAACTTGCAT
TCTCTTTGTTATCATTTCAGTTTCTCTTGCAAACACCGATTTTTGTCTCT
TGCTCTGCAGATAGGATGGATTTATGGTTCTGTTACGGAAGATATTCTTA
CAGGATTCAAGATGCATGCCCGTGGTTGGCGGTCAATTTACTGCATGCCT
AAGCGCCCAGCCCTTTAAGGGTCTGCTCCTATTAATCTTTCAGATCGTCT
AAACCAGTGCTNNCGTGGGCTCTAGGNTCTGTGGAAATTCTTTTCAGTCG
GCACTGTCCTATCTGGTATGGTATGGTGGTCGATTGAAATTTCTTGAGAA
GTTTGCCTATGTTGACACCACTATCATTCTCTCACTGCAATTCCTCTTCT
CATGTATTGCACGCTGCCAACTGTCTGTCTATTAACGAACAGTTCATTAT
GCTCAAGTATTTNATCATTACCATTACTCACTTTTTACCTTTTTATTTTT
CAGGTTGTGAAAATGACTCCTACCCTAAATTCTTTTGTT
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