EY659251

Overview
NameEY659251
Unique NameEY659251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY659251 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 63/253 (24.90%), Postives = 110/253 (43.48%), Query Frame = 1 
Query:   19 FLREGLEPSETMIGHIIEMEMDYINTSHPNFIGGSKAVEIALQQIKSSKVPLPITRHKDGVEPDKAPSSERSLKSRAILARQVNGIMADQGVRPTVEVEKVAPAGNTXXXXXXXXXXXXXXDNRVSAGKESVTNKPFSEPVQNMEHAFAMIHLREPPTILRPSESHSEQENVEIAVTKLLLRSYYDIVRKNIEDSIPKAVMHFLVNHTKRELHNVFIKKLYRENLXEEMLQEPXEGSMKRKRTRDTLRVLQQA 777
            FL++   P+   +  II+ E  YINT+HP+ + GS+A+ +  +++   +V +     K G      PSS     S+A +  + +G     G   T   +K+A                                                  L  PP +L+ +   +E+E +E  V KLL+ SY+ IV++ I D IPKA+M  L+  +K ++  V ++KLY +   EE+ +E      +RK  +  + +L+ A
Sbjct:  504 FLKDATIPTNEFVVDIIKAEQTYINTAHPDLLKGSQAMVMVEEKLHPRQVAVD---PKTGKPLPTQPSS-----SKAPVMEEKSGFFG--GFFSTKNKKKLAA-------------------------------------------------LESPPPVLKATGQMTERETMETEVIKLLISSYFSIVKRTIADIIPKALMLKLIVKSKTDIQKVLLEKLYGKQDIEELTKENDITIQRRKECKKMVEILRNA 697
The following BLAST results are available for this feature:
BLAST of EY659251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VPS1_YEAST8.845e-1424.90Vacuolar protein sorting-associated protein 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659251 ID=EY659251; Name=EY659251; organism=Citrus sinensis; type=EST; length=866bp
GATGAGGTCATCGGGAACTTTCTGCGAGAAGGCCTTGAGCCCTCCGAGAC
AATGATTGGACATATCATTGAAATGGAGATGGACTATATAAACACTTCCC
ATCCAAATTTTATTGGTGGAAGTAAAGCTGTGGAAATTGCACTGCAGCAG
ATCAAGTCTTCTAAGGTTCCTTTGCCCATAACCAGGCATAAGGATGGTGT
GGAACCCGATAAGGCACCAAGCTCCGAGAGAAGCTTAAAGTCTCGAGCTA
TTCTTGCAAGACAAGTCAATGGAATCATGGCTGATCAGGGAGTTCGTCCT
ACAGTGGAAGTTGAAAAAGTAGCTCCCGCTGGAAACACAAGTGGTTCAAG
TTGGGGGATTTCATCAATTTTTGGGGGGAGTGATAACCGTGTGTCTGCTG
GCAAGGAGAGCGTAACAAACAAGCCATTCAGTGAGCCTGTCCAGAACATG
GAGCATGCTTTTGCTATGATCCATTTGAGAGAGCCTCCAACCATCTTGAG
GCCCTCAGAAAGCCATTCAGAACAGGAGAATGTTGAAATCGCAGTGACAA
AATTGCTGTTGAGATCATACTATGATATTGTTCGGAAGAATATCGAGGAC
TCAATACCTAAAGCAGTTATGCATTTCCTGGTGAATCATACAAAACGTGA
GCTGCATAATGTCTTCATTAAAAAGCTTTACAGAGAAAACCTGNTTGAAG
AGATGCTTCAGGAGCCTNGAGAGGGTAGCATGAAGAGAAAGCGTACACGA
GACACACTTCGAGTTCTTCAGCAAGCTTTCGGACATTGGATGAATTGCCA
TTAGAAGCTGATTCAGNTGAGAAGGGGATACATATGANCGCTGATCCCAC
AGACTGNCAAGATCCA
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