EY659248
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.747e-21 Identity = 63/225 (28.00%), Postives = 105/225 (46.67%), Query Frame = 2 Query: 11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDV-ITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHL 676 FV+GHDCGH SF+ +N +VGH+ + ++ P+H WR+ H HH + +E D +W P S + ++ + R + + PF+ + HF ++ F +R V ++ V + A L G +K + +P+ ++ W+ T +HH E + + +WS L T+ DY W + HDI H+ HHL IP Y+L Sbjct: 86 FVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAFQASPAIVRLF-----YRAIRGPFWWTGSIFHWSLMHFKLSN--FAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPE--IRFRPAADWSAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNL 301
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.044e-20 Identity = 70/242 (28.93%), Postives = 110/242 (45.45%), Query Frame = 2 Query: 11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVG---LSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXT 721 FV+GHDC H SFS + + +VG L ++ PY WR H HH + +D +W P+ + + ++ LR I F P W HF N F PSE V S C A + VG + + +G + +K + +P+ + W+ T +HH +P+ EW+ + L T+ DY W + HDI H+ HH+ P+IP Y+L + ++ + G T Sbjct: 162 FVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEF----DSSPVLRKAIIFGY--GPIRPWLSIAHWVNWHF--NLRKFRPSEVNRVKISLAC--VFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYT 391
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20 Identity = 68/257 (26.46%), Postives = 112/257 (43.58%), Query Frame = 2 Query: 11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAY-PFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXTVSQRNRXRYXLTFL 763 FV+GHDC H SFS + + +VG L ++ PY WR H HH + D +W P+ ++ + + L + AY P W HF N F SE K S A +++G ++ G + +K + +P+ + W+ T +HH +P+ KEW+ + L+ T+ DY W + HDI H+ HH+ P+IP Y+L + ++ G ++ R T + Sbjct: 167 FVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKAL-------IYAYGPLRTWMSIAHWLKVHF--NLKDFRQSEVKRATISLA--AVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTA--PHIPFKSSKEWNAAQAQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIM 410
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20 Identity = 67/242 (27.69%), Postives = 107/242 (44.21%), Query Frame = 2 Query: 11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVG---LSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXT 721 FV+GHDC H SFS + + +VG L ++ PY WR H HH + +D +W P+ + + + + + F P W HF N F SE V S C A + VG + + +G + +K + +P+ + W+ T +HH +P+ EW+ + L T+ DY W + HDI H+ HH+ P+IP Y+L + E+ + G T Sbjct: 167 FVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFESSPVMRKAIIFGYG------PIRPWLSIAHWVNWHF--NLKKFRASEVNRVKISLAC--VFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYT 396 The following BLAST results are available for this feature:
BLAST of EY659248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY659248 ID=EY659248; Name=EY659248; organism=Citrus sinensis; type=EST; length=903bpback to top |