EY659248

Overview
NameEY659248
Unique NameEY659248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.747e-21
Identity = 63/225 (28.00%), Postives = 105/225 (46.67%), Query Frame = 2
Query:   11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDV-ITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHL 676
            FV+GHDCGH SF+    +N +VGH+  + ++ P+H WR+ H  HH +   +E D +W P S + ++   +  R       +  +  PF+        +  HF  ++  F   +R  V ++  V +   A     L    G    +K + +P+ ++  W+   T +HH   E  + +    +WS     L  T+  DY  W   + HDI  H+ HHL   IP Y+L
Sbjct:   86 FVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAFQASPAIVRLF-----YRAIRGPFWWTGSIFHWSLMHFKLSN--FAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPE--IRFRPAADWSAAEAQLNGTVHCDYPRWVEVLCHDINVHIPHHLSVAIPSYNL 301          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.044e-20
Identity = 70/242 (28.93%), Postives = 110/242 (45.45%), Query Frame = 2
Query:   11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVG---LSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXT 721
            FV+GHDC H SFS +  +  +VG L    ++ PY  WR  H  HH     + +D +W P+  + +     ++  LR  I F     P   W         HF  N   F PSE   V  S  C    A + VG   + + +G +  +K + +P+  +  W+   T +HH      +P+    EW+  +  L  T+  DY  W   + HDI  H+ HH+ P+IP Y+L  + ++ +   G  T
Sbjct:  162 FVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEF----DSSPVLRKAIIFGY--GPIRPWLSIAHWVNWHF--NLRKFRPSEVNRVKISLAC--VFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHQSIQENWGKYT 391          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.037e-20
Identity = 68/257 (26.46%), Postives = 112/257 (43.58%), Query Frame = 2
Query:   11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAY-PFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXTVSQRNRXRYXLTFL 763
            FV+GHDC H SFS +  +  +VG L    ++ PY  WR  H  HH     +  D +W P+ ++   +     + L       + AY P   W         HF  N   F  SE K    S       A +++G   ++   G +  +K + +P+  +  W+   T +HH      +P+   KEW+  +  L+ T+  DY  W   + HDI  H+ HH+ P+IP Y+L  + ++     G      ++  R   T +
Sbjct:  167 FVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKAL-------IYAYGPLRTWMSIAHWLKVHF--NLKDFRQSEVKRATISLA--AVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTA--PHIPFKSSKEWNAAQAQLSGTVHCDYPRWIEILCHDISVHIPHHISPKIPSYNLRAANQSLNENWGEYLNKPKSNWRLMRTIM 410          
BLAST of EY659248 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.966e-20
Identity = 67/242 (27.69%), Postives = 107/242 (44.21%), Query Frame = 2
Query:   11 FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVG---LSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGWLT-TLDRDY-GWFNNIHHDIGTHVIHHLFPQIPHYHLIESTEAARPVLGNXT 721
            FV+GHDC H SFS +  +  +VG L    ++ PY  WR  H  HH     + +D +W P+  + + +     + + F         P   W         HF  N   F  SE   V  S  C    A + VG   + + +G +  +K + +P+  +  W+   T +HH      +P+    EW+  +  L  T+  DY  W   + HDI  H+ HH+ P+IP Y+L  + E+ +   G  T
Sbjct:  167 FVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFESSPVMRKAIIFGYG------PIRPWLSIAHWVNWHF--NLKKFRASEVNRVKISLAC--VFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTA--PHIPFKPADEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHISPRIPSYNLRAAHESIQENWGKYT 396          
The following BLAST results are available for this feature:
BLAST of EY659248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DESA_SYNY32.747e-2128.00Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
FAD6C_BRANA1.044e-2028.93Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_SPIOL3.037e-2026.46Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
FAD6C_ARATH3.966e-2027.69Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659248 ID=EY659248; Name=EY659248; organism=Citrus sinensis; type=EST; length=903bp
TTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGTCATGGAAGCTTTTCAA
ATGATCACAAGTTGAATAGTGTGGTGGGGCATCTGCTGCATTCTTCAATT
CTGGTTCCTTATCATGGATGGAGAATTAGCCACAGGACTCATCATCAAAA
CCATGGGCATGTTGAGAATGATGAATCCTGGCACCCGTTGTCTGAGAAAA
TTTACAGGACTTTGGATAGTGCAACAAGATTTTTGAGATTCAAAATTCCT
TTTCCCTTGCTTGCATATCCCTTTTATCTTTGGAGTAGGAGTCCGGGGAA
GACTGGTTCTCACTTTGACCCTAACAGTGACCTGTTTGTCCCAAGTGAGA
GGAAGGATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCTGCTTTG
CTAGTGGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAAACTCTA
TGGCGTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGACTTACT
TGCATCACCATGGGCATGAAGACAAACTTCCGTGGTATCGTGGAAAGGAA
TGGAGTTACTTAAGGGGATGGCTCACAACACTTGATCGTGACTATGGATG
GTTCAATAACATCCACCACGATATTGGGACCCACGTCATACATCACCTCT
TCCCTCAGATCCCGCATTACCACTTAATAGAAAGCACTGAGGCTGCTAGA
CCAGTTCTTGGAAATNATACCGTGAGCCAAAGAAATCGGNACCGATACCN
TTTAACCTTTTTGGGAGATTAATANAAGCATGGGTAAAGACACTATGTTA
GTGACATGGGCGATTGGTGTTACTACCAGACCGACCACAGCTTAACGCTC
TTCCAATCAGGGTAAAGCTGCAGCTTNCTTATCTGACCGGCGTATTTAAT
ACC
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