EY659244

Overview
NameEY659244
Unique NameEY659244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY659244_ssr59 microsatellite EY659244_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY659244 vs. ExPASy Swiss-Prot
Match: MCFN_DICDI (Mitochondrial substrate carrier family protein N OS=Dictyostelium discoideum GN=mcfN PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.309e-26
Identity = 67/170 (39.41%), Postives = 98/170 (57.65%), Query Frame = 3 
Query:  327 SPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKYKSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQSAWQVGFYEFFKKYYSDIAGPEYAAKYRTLIYLAGSASAEFMADVALCPFGAGKGPGQTQPVFCRRLGGGTSQVW*T*GRPGLDKGIVPLWGAPDPY 836
            +P+ +     GG LSC +TH+ V PLD+VK  +Q +P KY  + +GF  ++KEQG  G  +G  PT +GY+ Q   + GFYE FKK Y+D  G E A ++R  I+LA SA+AE +AD+ALCP  A +     +P F +       +++   G  G  KG+ P+     PY
Sbjct:    6 TPSLFLKYGFGGALSCSITHSLVVPLDVVKTLLQTNPGKYTGMMNGFSTVIKEQGPSGLLQGLGPTAVGYALQGFLKFGFYEVFKKTYADAVG-EKADQFRIPIWLAASATAEVIADIALCPNEAVRIRLVAEPTFAKSPVEAFGKIFKQEGVLGFYKGLPPILLKQVPY 174
The following BLAST results are available for this feature:
BLAST of EY659244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MCFN_DICDI1.309e-2639.41Mitochondrial substrate carrier family protein N O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-008-A02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659244 ID=EY659244; Name=EY659244; organism=Citrus sinensis; type=EST; length=923bp
TAACAAATTGGCAGCGAGTAACAGGAGGAGGAGAAGACAAAGATAAAATT
AAAAGAATTCTCTCTCTCTCGCTCTTTTTCTCTATAATTCAATCAAGCTT
TTAACTCTCAAAATCAAATTTCAAAAATTCCGAAATGGCCCTCACAGAAT
CTTATAGGAAAAACTCTCTGATACCAAGCTACCTCTACTCCTCCCAAACA
TCCTTCCCGTCCACGGCGGCTTTCAATGGAGCGGCAGCAGCCGCCACGTC
GCCGGCTACTCCATCCACGGCGAGGAGGAACTTCGTTGTTGCGGCACCGA
GCGAGCCAGGGAAGATAGAGATGTACTCCCCTGCATTCTACGCCGCTTGT
ACCGTCGGCGGGATCCTCAGCTGCGGCCTCACTCACACGGCCGTCACTCC
TCTTGACCTCGTCAAGTGCAATATGCAGATTGATCCTGTTAAGTACAAAA
GCATATCATCTGGTTTTGGAGTTTTGCTCAAGGAACAGGGAATCAGGGGC
TTCTTCAGGGGATGGGTACCTACCTTGCTTGGGTACAGCGCCCAAAGTGC
TTGGCAAGTTGGATTCTACGAGTTCTTCAAGAAGTACTACTCTGACATTG
CTGGCCCAGAGTATGCTGCTAAGTACAGGACTTTAATCTACCTTGCTGGC
TCTGCTTCTGCTGAGTTCATGGCTGATGTTGCTCTTTGCCCCTTTGGAGC
CGGGAAAGGTCCGGGTCAGACTCAACCCGTTTTTTGCCGAAGGTTGGGGG
GTGGGACTTCCCAAGTCTGGTAAACTTGAGGCCGCCCTGGGTTGGACAAA
GGGATCGTTCCCCTTTGGGGGGCCCCAGATCCCTATCCTTAAAAGAACGC
TGCTCTTTTGAAACACTGGGGAAAGATCTAAACCTGCGAGTCCCCATCCA
AGGCAAGGGAGAAACTCTTGTTT
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