EY659242

Overview
NameEY659242
Unique NameEY659242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7428 contig Csv1_Contig7428:165..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_YARLI (Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.830e-24
Identity = 59/135 (43.70%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            SG+ V D +  AF EL+  K   ++I+KI+           G   +SY+ F   LPENDCRYAVYDF+Y ++S   ++SK+ F  WSP T+ +R+KM+YA+SKD  RR L GI  EIQ TD +E+  E ++ R +
Sbjct:   14 SGVAVNDSALQAFNELKLGKKVTFIIYKINDAKTEIVVEEEG-TTDSYDTFLGKLPENDCRYAVYDFEYEISSGEGKRSKLVFFTWSPDTAPVRSKMIYASSKDSLRRALTGISTEIQGTDFSEVAYESVLERVS 147          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: ACTP_ACACA (Actophorin OS=Acanthamoeba castellanii PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.827e-24
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRA 519
            SG+ V+D     F EL+    HRYV FK++           GGP  +YEDF + LPE DCRYA++D+++   +  Q++KI FI W+P ++ I++KM+Y ++KD  +++L GI  E+QATD  E+  + +  RA
Sbjct:    2 SGIAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERA 133          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_ZYGRO (Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.233e-24
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            SG+ VAD S  AF +L+  K +++V++ I           T   ++SY++F   LPENDC YA+YDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L G+  +IQ TD +E+  E ++ R +
Sbjct:    4 SGVSVADESLQAFNDLKLGKKYKFVLYGISEDKTTIVVKETS-TSQSYDEFLGKLPENDCLYAIYDFEYEIGGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALTGVSSDIQGTDFSEVSFETVLERVS 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_KLULA (Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.395e-23
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            SG+ VAD S NAF +L+  K ++++++ ++          T    + Y+ F   LPENDC YAVYDF+Y    N  ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  +IQ TD +E+  E ++ + +
Sbjct:    4 SGVAVADESLNAFNDLKLGKKYKFILYALNDSKTEIIVKETSAE-QDYDKFLEQLPENDCLYAVYDFEYELGNNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_CANGA (Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.970e-23
Identity = 56/135 (41.48%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSEN-CQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            SG+ VAD S  AF +L+    +++V+F ++          T     SY+ F   LPENDC YAVYDF+Y  SE+  ++SKI F  WSP T+ +R KM+YA+SKD  +R L+G+  EIQ TD +E+  E ++ + +
Sbjct:    4 SGVAVADESIQAFNDLKLGMKYKFVLFSLNDAKTEIVVKETSSDP-SYDAFLEKLPENDCLYAVYDFEYQISESEGKRSKIVFFTWSPDTASVRPKMVYASSKDALKRALNGVAIEIQGTDFSEVSYEAVLEKVS 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_DEBHA (Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.103e-23
Identity = 52/135 (38.52%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            SG+ VAD S  AF +L+  K ++++IF ++          T   ++ Y+ F   LPEN+C+YA+YDF+Y +     ++SKI F  WSP T+ I++KM+YA+SKD  RR L+G+  ++Q TD +E+  E +++R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFIIFALNDQKTEIVVEETSNNSD-YDAFLEKLPENECKYAIYDFEYEIGGGEGKRSKIVFFTWSPDTAPIKSKMIYASSKDALRRALNGVSSDVQGTDFSEVAYESVLDRVS 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: ADF11_ARATH (Putative actin-depolymerizing factor 11 OS=Arabidopsis thaliana GN=ADF11 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.103e-23
Identity = 56/137 (40.88%), Postives = 84/137 (61.31%), Query Frame = 1
Query:  127 MGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXT-----GGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            M + D  K  F EL+ ++  R +++KI+                G   +SYE+FA +LP ++CRYA+ D ++V  E     KI FIAWSPST+++R KM+Y+++KDRF+RELDGI  E  ATD T++ L+ +  R N
Sbjct:    1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLPADECRYAILDIEFVPGER----KICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRIN 133          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_YEAST (Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.189e-22
Identity = 52/135 (38.52%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            SG+ VAD S  AF +L+  K +++++F ++          T     SY+ F   LPENDC YA+YDF+Y +     ++SKI F  WSP T+ +R+KM+YA+SKD  RR L+G+  ++Q TD +E+  + ++ R +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETSTDP-SYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERVS 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.553e-22
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSE-NCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINR 516
            SG+ V+D +  AF +L+  K  + +I+K++          T    ++Y+ F   LPENDCRYAVYDF+Y   + + +++KI F  WSP T+ +RAKM+YA+SKD  RR L+GI  EIQ TD +E+  E ++ +
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTS-TEDAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYESVLEK 135          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.459e-22
Identity = 54/135 (40.00%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            SG+ VAD S  AF +L+  K +++V+F ++          T    + Y+ F   LPE+DC YAVYDF+Y ++    ++SKI F  WSP T+ IR+KM+YA+SKD  RR L+G+  +IQ TD +E+  E ++ + +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNERD-YDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYESVLEKVS 137          
The following BLAST results are available for this feature:
BLAST of EY659242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COFI_YARLI2.830e-2443.70Cofilin OS=Yarrowia lipolytica GN=COF1 PE=3 SV=1[more]
ACTP_ACACA4.827e-2439.85Actophorin OS=Acanthamoeba castellanii PE=1 SV=2[more]
COFI_ZYGRO8.233e-2441.48Cofilin OS=Zygosaccharomyces rouxii GN=cof1 PE=2 S... [more]
COFI_KLULA2.395e-2340.00Cofilin OS=Kluyveromyces lactis GN=COF1 PE=3 SV=1[more]
COFI_CANGA6.970e-2341.48Cofilin OS=Candida glabrata GN=COF1 PE=3 SV=1[more]
COFI_DEBHA9.103e-2338.52Cofilin OS=Debaryomyces hansenii GN=COF1 PE=3 SV=1[more]
ADF11_ARATH9.103e-2340.88Putative actin-depolymerizing factor 11 OS=Arabido... [more]
COFI_YEAST1.189e-2238.52Cofilin OS=Saccharomyces cerevisiae GN=COF1 PE=1 S... [more]
COFI_PICAN1.553e-2241.35Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_ASHGO3.459e-2240.00Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659242 ID=EY659242; Name=EY659242; organism=Citrus sinensis; type=EST; length=942bp
TCGGTGCCGGNATTCAAAGGCGTGACCCACGCGTCCGGTTTATTTTCTTG
CTCTGGTGATCTGCGTTCTGCCGCTGCCGCCGCCATGTCTTTCAGAGGAC
TAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAA
AATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTT
TAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCC
CCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGT
CGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAA
GAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTG
CCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGGAGCTGGAT
GGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATGGATCTTGA
AGAGCTTATAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTT
CCTTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTT
GCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGG
CAATGTGGGAAGACTGAATGCGCTGAGGCTATCTTGCTGCGGTGAAATTA
GCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGATGGTTCGCTGG
GTATTTGGGAATCCTANAACATATTATCGTACCATTGATCTCTATTCATA
TTCGCTGGCCTTGTACTTCTCCTCGATCTATTTCTATATGCGAAAGTGGC
CACGACACATACAAATGAAGGCACACTTCTTATTAAAAAACAAAAAAAAT
GGCGGCCGCTTAAAGAACCAGCTTCATCCCGTGCTGCAACTT
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