EY659242

Overview
NameEY659242
Unique NameEY659242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7428 contig Csv1_Contig7428:165..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_USTMA (Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.228e-20
Identity = 48/135 (35.56%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  118 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            +SG+ V+    + F EL+  K  +Y+I+ ++          T   + SY+DF A LP  +CRYA+YDF+Y   +  +++KI F +WSP  ++I+ KM++A+SKD  R+ L GI  EIQ TD +E+  + ++++ +
Sbjct:    2 SSGVKVSQECLDKFQELKLGKKIKYIIYSLNDKNTEIVVQNTS-TSTSYDDFLAELPPTECRYAIYDFEYEKGDAGKRNKICFFSWSPDDAKIKPKMVFASSKDALRKALVGISTEIQGTDFSEVSYDTVLDKVS 135          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_SCHPO (Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.106e-19
Identity = 51/132 (38.64%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINR 516
            SG+ V+     AF EL+  K  RYV+FK++               + ++ F   LPE DCRYA+YDF++   E   ++KI FI+WSP  + I++KM+Y++SKD  RR   GI  +IQATD +E+  E ++ +
Sbjct:    4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKD-FDTFLGDLPEKDCRYAIYDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEK 133          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 49/135 (36.30%), Postives = 75/135 (55.56%), Query Frame = 1
Query:  118 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRA 519
            +SG+         F EL+  K   YVI+ +                + ++ F A LPE DCR+AVYDF++ +      ++K+ FI WSP  + ++ KM++A+SK+  RR LDGIH EIQATD +E+  + L  +A
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASEDKD-FDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.964e-17
Identity = 46/125 (36.80%), Postives = 71/125 (56.80%), Query Frame = 1
Query:  118 TSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 492
            +SG+ +A +  + F +L+  + +  +I++I           T     S+++F   LPEN+CRY V D+ Y   E  QKSKI F+AW P T+ I+ KM+  +SKD  R+   GI  EIQ TD +E+
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEV 125          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.273e-16
Identity = 48/135 (35.56%), Postives = 77/135 (57.04%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPE---NDCRYAVYDFDYV-----TSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLE 501
            SG+ V+D  K  + E+++ K HRYVIF I               AE Y+ F   + +    +CRY ++DF+Y+     TSE+ +K K+F ++W P T++++ KMLY++S D  ++ L G+   IQATD +E   E
Sbjct:    3 SGVTVSDVCKTTYEEIKKDKKHRYVIFYIRDEKQIDVETVADRNAE-YDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASRE 136          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF4_DICDI (Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 33/79 (41.77%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEM 492
            ES+ED+    P++DCRY VYDF Y+ ++  +K+KIFFI+W P  ++I+ K+++  ++    ++L GI   I+ATD TE+
Sbjct:   47 ESFEDYINKFPQDDCRYGVYDFSYMDNKENKKNKIFFISWCPVETKIKNKIVHTATEQSIYKKLVGIDAIIKATDNTEI 125          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: DEST_PIG (Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 495
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: DEST_HUMAN (Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 495
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: DEST_BOVIN (Destrin OS=Bos taurus GN=DSTN PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 495
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: DEST_RAT (Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.457e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 495
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144          
The following BLAST results are available for this feature:
BLAST of EY659242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
COFI_USTMA4.228e-2035.56Cofilin OS=Ustilago maydis GN=COF1 PE=3 SV=1[more]
COFI_SCHPO6.106e-1938.64Cofilin OS=Schizosaccharomyces pombe GN=cof1 PE=1 ... [more]
COFI_CRYNE1.964e-1736.30Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COF1_DICDI1.964e-1736.80Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
CADF_DROME1.273e-1635.56Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COF4_DICDI2.247e-1341.77Cofilin-4 OS=Dictyostelium discoideum GN=cofE PE=3... [more]
DEST_PIG1.115e-1237.50Destrin OS=Sus scrofa GN=DSTN PE=1 SV=3[more]
DEST_HUMAN1.115e-1237.50Destrin OS=Homo sapiens GN=DSTN PE=1 SV=3[more]
DEST_BOVIN1.115e-1237.50Destrin OS=Bos taurus GN=DSTN PE=2 SV=3[more]
DEST_RAT1.457e-1237.50Destrin OS=Rattus norvegicus GN=Dstn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659242 ID=EY659242; Name=EY659242; organism=Citrus sinensis; type=EST; length=942bp
TCGGTGCCGGNATTCAAAGGCGTGACCCACGCGTCCGGTTTATTTTCTTG
CTCTGGTGATCTGCGTTCTGCCGCTGCCGCCGCCATGTCTTTCAGAGGAC
TAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAA
AATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTT
TAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCC
CCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGT
CGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAA
GAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTG
CCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGGAGCTGGAT
GGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATGGATCTTGA
AGAGCTTATAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTT
CCTTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTT
GCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGG
CAATGTGGGAAGACTGAATGCGCTGAGGCTATCTTGCTGCGGTGAAATTA
GCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGATGGTTCGCTGG
GTATTTGGGAATCCTANAACATATTATCGTACCATTGATCTCTATTCATA
TTCGCTGGCCTTGTACTTCTCCTCGATCTATTTCTATATGCGAAAGTGGC
CACGACACATACAAATGAAGGCACACTTCTTATTAAAAAACAAAAAAAAT
GGCGGCCGCTTAAAGAACCAGCTTCATCCCGTGCTGCAACTT
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