EY659242

Overview
NameEY659242
Unique NameEY659242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7428 contig Csv1_Contig7428:165..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: DEST_MOUSE (Destrin OS=Mus musculus GN=Dstn PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.457e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 495
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFPGIKHEYQANGPEDLN 144          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: DEST_CHICK (Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.457e-12
Identity = 30/80 (37.50%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMD 495
            + ++ F   LPE DCRYA+YD  + T E+ +K ++ F  W+P  + +++KM+YA+SKD  +++  GI +E QA  P +++
Sbjct:   66 DPFKHFVEMLPEKDCRYALYDASFETKES-KKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 144          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.457e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 474
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.457e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 474
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_MOUSE (Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 474
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPENAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_SHEEP (Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 474
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_PIG (Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 474
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_MACFA (Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 474
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_BOVIN (Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQA 474
            + Y  F   LP+ DCRYA+YD  Y T E+ +K  + FI W+P  + +++KM+YA+SKD  +++L GI +E+QA
Sbjct:   66 DPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPECAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: CADF2_PLAFX (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate HB3) PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.245e-12
Identity = 41/134 (30.60%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXT-GGPAESYEDFAAALPEN----DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 507
            SG+ V+D     F +L+ K +H+Y+I++I+                +SY+D    +  N    +CRY + D    T E   +++I+FI WSP  ++ + KMLYA+SK+   R+++GI   ++ T   E   +EL
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDEL 136          
The following BLAST results are available for this feature:
BLAST of EY659242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
DEST_MOUSE1.457e-1237.50Destrin OS=Mus musculus GN=Dstn PE=1 SV=3[more]
DEST_CHICK1.457e-1237.50Destrin OS=Gallus gallus GN=DSTN PE=1 SV=3[more]
COF1_RAT1.457e-1243.84Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN1.457e-1243.84Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]
COF1_MOUSE1.902e-1243.84Cofilin-1 OS=Mus musculus GN=Cfl1 PE=1 SV=3[more]
COF1_SHEEP2.485e-1243.84Cofilin-1 OS=Ovis aries GN=CFL1 PE=2 SV=3[more]
COF1_PIG2.485e-1243.84Cofilin-1 OS=Sus scrofa GN=CFL1 PE=1 SV=3[more]
COF1_MACFA2.485e-1243.84Cofilin-1 OS=Macaca fascicularis GN=CFL1 PE=2 SV=3[more]
COF1_BOVIN2.485e-1243.84Cofilin-1 OS=Bos taurus GN=CFL1 PE=2 SV=3[more]
CADF2_PLAFX3.245e-1230.60Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659242 ID=EY659242; Name=EY659242; organism=Citrus sinensis; type=EST; length=942bp
TCGGTGCCGGNATTCAAAGGCGTGACCCACGCGTCCGGTTTATTTTCTTG
CTCTGGTGATCTGCGTTCTGCCGCTGCCGCCGCCATGTCTTTCAGAGGAC
TAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAA
AATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTT
TAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCC
CCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGT
CGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAA
GAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTG
CCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGGAGCTGGAT
GGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATGGATCTTGA
AGAGCTTATAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTT
CCTTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTT
GCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGG
CAATGTGGGAAGACTGAATGCGCTGAGGCTATCTTGCTGCGGTGAAATTA
GCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGATGGTTCGCTGG
GTATTTGGGAATCCTANAACATATTATCGTACCATTGATCTCTATTCATA
TTCGCTGGCCTTGTACTTCTCCTCGATCTATTTCTATATGCGAAAGTGGC
CACGACACATACAAATGAAGGCACACTTCTTATTAAAAAACAAAAAAAAT
GGCGGCCGCTTAAAGAACCAGCTTCATCCCGTGCTGCAACTT
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