EY659242

Overview
NameEY659242
Unique NameEY659242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7428 contig Csv1_Contig7428:165..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: CADF2_PLAF7 (Cofilin/actin-depolymerizing factor homolog 2 OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0326 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.245e-12
Identity = 41/134 (30.60%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  121 SGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXT-GGPAESYEDFAAALPEN----DCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEEL 507
            SG+ V+D     F +L+ K +H+Y+I++I+                +SY+D    +  N    +CRY + D    T E   +++I+FI WSP  ++ + KMLYA+SK+   R+++GI   ++ T   E   +EL
Sbjct:    3 SGVKVSDECVYEFNKLKIKHIHKYIIYRIENYEEVIVDFLEQDNSLKSYKDIIIDIRNNLKTTECRYIIADMPIPTPEGVLRNRIYFIFWSPDLAKSKEKMLYASSKEYLVRKINGIFKSLEITCDLEDFEDEL 136          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.535e-12
Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  154 AFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDC-----------RYAVYDFDY-VTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELI 510
            AF +L+  K ++++++K+               +  +EDF   L                RYAVYDF+Y + S +  ++KI FIAWSP  + I+ KM+YA+SK+  +R L GI  E+QA D  +++ + ++
Sbjct:    6 AFNDLKLNKKYKFIVYKLSDDYKEIVIDKAS-ESRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYDSIL 135          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1B_XENLA (Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  R+   GI +E Q    T  D+ +  N A+
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIRKRFTGIKHEWQTN--TYDDINDPCNLAD 151          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1A_XENLA (Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRAN 522
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++ L GI +E Q    T  D+ +  N A+
Sbjct:   66 DPYKTFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRLPGIKHEWQIN--TYEDVNDPCNLAD 151          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF2_PIG (Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 471
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF2_MOUSE (Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 471
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF2_HUMAN (Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 471
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF2_BOVIN (Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 471
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTSFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.686e-11
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQ 471
            + Y  F   LP NDCRYA+YD  Y T E+ +K  + FI W+P ++ +++KM+YA+SKD  +++  GI +E Q
Sbjct:   66 DPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQ 136          
BLAST of EY659242 vs. ExPASy Swiss-Prot
Match: COF1_XENTR (Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.120e-11
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  256 ESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLEELINRA 519
            + Y+ F   LP NDCRYA+YD  Y T E  +K  + F+ W+P  + +++KM+YA+SKD  ++   GI +E Q    T  D+ +  N A
Sbjct:   66 DPYKAFVKMLPRNDCRYALYDALYETKET-KKEDLVFVFWAPEEASLKSKMIYASSKDAIKKRFPGIKHEWQTN--TFEDINDPCNLA 150          
The following BLAST results are available for this feature:
BLAST of EY659242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CADF2_PLAF73.245e-1230.60Cofilin/actin-depolymerizing factor homolog 2 OS=P... [more]
COFI_GIBZE5.535e-1231.30Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF1B_XENLA1.611e-1139.33Cofilin-1-B OS=Xenopus laevis GN=cfl1-B PE=1 SV=3[more]
COF1A_XENLA1.611e-1139.33Cofilin-1-A OS=Xenopus laevis GN=cfl1-A PE=1 SV=3[more]
COF2_PIG2.747e-1143.06Cofilin-2 OS=Sus scrofa GN=CFL2 PE=2 SV=4[more]
COF2_MOUSE2.747e-1143.06Cofilin-2 OS=Mus musculus GN=Cfl2 PE=1 SV=1[more]
COF2_HUMAN2.747e-1143.06Cofilin-2 OS=Homo sapiens GN=CFL2 PE=1 SV=1[more]
COF2_BOVIN2.747e-1143.06Cofilin-2 OS=Bos taurus GN=CFL2 PE=2 SV=1[more]
COF2_CHICK4.686e-1143.06Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF1_XENTR6.120e-1138.64Cofilin-1 OS=Xenopus tropicalis GN=cfl1 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-H12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659242 ID=EY659242; Name=EY659242; organism=Citrus sinensis; type=EST; length=942bp
TCGGTGCCGGNATTCAAAGGCGTGACCCACGCGTCCGGTTTATTTTCTTG
CTCTGGTGATCTGCGTTCTGCCGCTGCCGCCGCCATGTCTTTCAGAGGAC
TAAGTCGACCAAATGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAA
AATGCATTCACGGAATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTT
TAAGATTGATGAGAAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCC
CCGCTGAGAGCTACGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGT
CGATATGCTGTATATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAA
GAGCAAGATATTCTTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTG
CCAAGATGCTGTACGCCACATCTAAAGACAGATTTCGACGGGAGCTGGAT
GGTATCCACTATGAGATTCAGGCTACTGATCCTACAGAGATGGATCTTGA
AGAGCTTATAAACCGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTT
CCTTCCATGAAAAAAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTT
GCTTCATTAATCTATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGG
CAATGTGGGAAGACTGAATGCGCTGAGGCTATCTTGCTGCGGTGAAATTA
GCTTCCCAGTGGTTTATTGCTACTCTGATGAATATAAGATGGTTCGCTGG
GTATTTGGGAATCCTANAACATATTATCGTACCATTGATCTCTATTCATA
TTCGCTGGCCTTGTACTTCTCCTCGATCTATTTCTATATGCGAAAGTGGC
CACGACACATACAAATGAAGGCACACTTCTTATTAAAAAACAAAAAAAAT
GGCGGCCGCTTAAAGAACCAGCTTCATCCCGTGCTGCAACTT
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