EY659216

Overview
NameEY659216
Unique NameEY659216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10018 contig Csv1_Contig10018:729..1443. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAAR (30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252) GN=rpsA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  160 ELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAAN (30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315) GN=rpsA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  160 ELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAAM (30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  160 ELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAAC (30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL) GN=rpsA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 48/115 (41.74%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            E+D E +R++LS RKA+   +           L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G  +KV I S DR+  R+SLS K   PTP + I+
Sbjct:  160 ELDPENNRVILS-RKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIK 273          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 37/98 (37.76%), Postives = 68/98 (69.39%), Query Frame = 1
Query:   52 VDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLE 342
            V+E+ + L+LS+R+A+ A + + L +G+++ G +  + PYG FI  G + GL+H+S+I+  +V  I +  + GDT+K +I+  D+++GR+SLS K L+
Sbjct:  166 VEEKSNNLILSHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKHLK 263          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.863e-14
Identity = 35/97 (36.08%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   52 VDEEQSRLVLSNRKAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKL 339
            V+E+ + L+LS+R+A+ + + + L +G+++ G +  + PYG FI +G + GL+H+S+I+   +  I++  + GDT+K +I+  D+++GR+SLS K L
Sbjct:  166 VEEKSNNLILSHRRALISQASSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVIIHVDKKQGRLSLSMKHL 262          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAS1 (30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            E+D   +R++LS +   A   A+        L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G+T+ V I S D++  R+SLS K   P+P + I+
Sbjct:  160 ELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIK 273          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAEQ (30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 46/115 (40.00%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAM---------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            E+D E +R++LS RKA+         A     L  G V+ G V  L  +GAFIDIGG++GL+HVS++SH+ V     V+  G+ +KV + S +++  R+SLS K   PTP + I+
Sbjct:  160 ELDPENNRVILS-RKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIK 273          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_STAHJ (30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.421e-13
Identity = 43/115 (37.39%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIR 366
            E+D E +R++LS RKA+  ++           L  G V+ G V  L  +GAF+DIGG++GL+HVS++SH+ V     V+  G  + V + S +++  R+SLS K   PTP + I+
Sbjct:  160 ELDPENNRVILS-RKAVEQAENDVKKASLLESLNAGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIK 273          
BLAST of EY659216 vs. ExPASy Swiss-Prot
Match: RS1_RHIME (30S ribosomal protein S1 OS=Rhizobium meliloti GN=rpsA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   49 EVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMI 363
            ++D+ +  +V+S R  + +S+A+        L  G VV G V+++  YGAF+D+GGI+GLLHV+ ++  RV   + +L  G  +KV I+  ++E  R+SL  K+LE  P D I
Sbjct:  164 KMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPWDGI 276          
The following BLAST results are available for this feature:
BLAST of EY659216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS1_STAAR7.535e-1541.7430S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAN7.535e-1541.7430S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAM7.535e-1541.7430S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RS1_STAAC7.535e-1541.7430S ribosomal protein S1 OS=Staphylococcus aureus ... [more]
RR1_PORPU2.192e-1437.7630S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RR1_PORYE2.863e-1436.0830S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RS1_STAS14.884e-1437.7230S ribosomal protein S1 OS=Staphylococcus saproph... [more]
RS1_STAEQ4.884e-1440.0030S ribosomal protein S1 OS=Staphylococcus epiderm... [more]
RS1_STAHJ1.421e-1337.3930S ribosomal protein S1 OS=Staphylococcus haemoly... [more]
RS1_RHIME1.856e-1337.1730S ribosomal protein S1 OS=Rhizobium meliloti GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-004-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY659216 ID=EY659216; Name=EY659216; organism=Citrus sinensis; type=EST; length=713bp
AATCAACTGCAGAAGAGCTTCTCGGTAAAGACTTCCTCTAAGTTTGTGGA
GGTTGATGAGGAACAGTCTAGGCTTGTCCTAAGTAACCGCAAGGCCATGG
CTGACAGCCAGGCACAGCTAGGAATTGGATCAGTGGTCATTGGTACTGTA
CAGAGCCTGAAACCATATGGTGCCTTCATTGACATTGGTGGAATCAATGG
TCTTCTTCATGTCAGTCAGATCAGTCACGATCGTGTGGCTGATATTGCTA
CAGTGCTTCAACCTGGTGATACTCTCAAGGTCATGATACTGAGCCATGAC
CGAGAGAGAGGCCGTGTCAGTCTTTCAACAAAGAAGTTAGAACCTACCCC
TGGAGACATGATTCGCAATCCAAAACTTGTTTTTGAGAAGGCTGAGGAGA
TGGCACAAACATTCAGGCAGAGAATTGCTCAAGCAGAAGCCATGGCTCGT
GCAGACATGCTTAGATTCCAGCCTGAGAGTGGCTTAACTCTTAACTCGGA
TGGGATCTTGGGTCCACTTTCACCTGACTTGCCGGCGGATGGATTAGATT
TGACTGACATTTCCCCAGCTGATGATTGAACTTAAATAGCAGTTGTATTG
TATCTTTTGCAACCCAAGACATATTATTAATTNTGTAAAATTTACTGCGA
TTGAAACTTCCAGCCAAATATGCAACTTCAAATTTTTTCCTCTTGGTTNA
AAAAAAAAAANNA
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